Detail information of Asa1G01043


Location
GeneChrStartEndStrand
Asa1G01043chr1275796985275809372-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrBAM08928.12.6e-111class I knotted1-like homeobox protein
SwissprotO04135.13.0e-96KNAP2
trEMBLI0IUH91.9e-111Class I knotted1-like homeobox protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G08150.167.771e-98 356BP;BP1;KNAT1KNOTTED-like from Arabidopsis thaliana

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag477853.t1
Allium fistulosumAfisC8G04746
Allium sativumAsa1G01043.1
Arabidopsis thalianaAT4G08150.1
Oryza sativaLOC_Os03g51690.1; LOC_Os03g51690.2; LOC_Os03g51690.3; LOC_Os07g03770.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03790.10KNOX1Family8712776.58.4e-22
PF03791.10KNOX2Family14218781.62.1e-23
PF03789.10ELKDomain23425535.37.3e-09
PF05920.8Homeobox_KNFamily27431360.41e-16

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15613MEIS1; homeobox protein Meis1EC:- Signaling pathways regulating pluripotency of stem cellsko04550

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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