result

Gene information

Detail information of Asa1G02052

Location

Gene	Chr	Start	End	Strand
Asa1G02052	chr1	547430001	547431010	-

Sequences

CDS

Protein

Gene

>Asa1G02052.1
ATGAACAACAACGACGCCGCGCAGCAAATTCCCCCGGGCTACCGATTCTTCCCGACGGAAGAAGAGCTCATCTCCTTCTACCTCGGCAACAAGCTCGCGGGCGCAAGAGAAGAAGAGATGGAGCAAGTCATTCCTACTGTGAACTTATACTACCTCGATCCATGGCAGCTTCCTGCCTTTGCTTCCGTGCAGGAGTCGGAGCAGtggttcttcttctgtcctcggcAGGAAAGGGAAGCGCATGGGGGCAGGCCTGCGCGGATCACGCCGTCCGGGTATTGGAAGGCCACCGGCTCGCCCGGCCCGGTGTATTCGGGTGCAAGTAAGCTTATAGGGGTGAAGAAAAGCATGGTGTTTTATGAAGGGAAGGCTcctagaggtaccaaaaccaaatgGAAGATGAATGAGTATAGAGCCCTGGATGAAACCACTGTCAATGGTGGCTCTTCTAAGGTACGTCGATAATAAGTTTAACTAGTGTTTTAAATACTGACCAAATCTCGATTCAACCACCATTAACTTTCGATCTTAAAACGTTACCTATACGAAAATGAATTAACATTGCTTAATGAATCCATGTACTGACATTTTTGAACCACATTATTCTTCAAGTTCGAAGAAAAAGCATCTTATTTTTTTCATGTAGTTCTTTATGTTAATTAGGAAAAGCCTTCAACGTCTTTAAAACAAACGGTTAGATctttgaaactattattttgtctGTTAATTATAAATTAGATATCCTTGATaacgtttattttcttttcttttttcattcttctttcttttagcaGCTAAGGAGCGAATTTAGCTTGTGTAGAGTGTACAAGAACTCGGGATGCATGAGAGCTTTTGATCGACGGCCATTAATGGATGCTGCAAAGGTTCCTGAACAAAGTTGTTCTTCTGAAGTTCGCAATGATGATGGTAGTTCTTTTGACGCGTCATTGGAAGAACTGAGAGAGGATATCAAGTTGCTAGAAGAAATGGGTTGGGAAGACTGGACTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008794217.1	1.3e-60	NAC domain-containing protein 90-like
Swissprot	Q9FMR3.1	1.5e-56	NAC domain-containing protein 90
trEMBL	A0A8B7C8W5	2.5e-61	NAC domain-containing protein 90-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G22380.1	61.05	7e-59	223	anac090;NAC090	NAC domain containing protein 90

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G02052	AT5G22380.1	172	64	1	7	175	2	173	61.05	7e-59	223
Asa1G02052	AT3G44350.2	172	73	3	7	175	2	171	54.65	1e-50	196
Asa1G02052	AT3G44350.1	172	69	3	7	175	2	158	49.42	2e-43	172

Ortholog group

Species	Genes
Allium cepa	g266335.t1
Allium fistulosum	AfisC8G03601
Allium sativum	Asa1G02052.1
Arabidopsis thaliana	AT3G44350.1; AT3G44350.2; AT5G22380.1
Oryza sativa	LOC_Os01g64310.1; LOC_Os01g64310.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	11	138	80.2	1.4e-22

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12581	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8	EC:-	RNA degradation	ko03018

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network