result

Gene information

Detail information of Asa1G02690

Location

Gene	Chr	Start	End	Strand
Asa1G02690	chr1	730716148	730717958	+

Sequences

CDS

Protein

Gene

>Asa1G02690.1
ATGGCGGAAGACGATTCAAAATCTCACGAACAGCTCAGGGAAAACGATGACGACATCAGCGATGAAAAATCGAGTTCCGAATCTCCACCGTCAAAATTAGCTCGGATATCTCCAGAAGAATCTTCAGGTAGTTATCCCTTTGACTTCAGTTTCGTATAGAAACGATTTAATTGTATAATTCAGCATCAACTTCCAAATCAGGAACTGTAACTACGGCAGCCGTTTCGCCACCGTTGAATATGGGATTAAATCTGACATTAGCAACGGAGTCGTCATTGGAAGTCACAGAATCGTCAAAAACAGGGTTCACTTTCATGCAGCTGCAAGAATATTACCACCAGGAATTGATATTCAAACACATCCTAGCAGGCGTGCCAGTTCCTATTCATCTCGTTTTGCCTATTTGGAAGAGCGTTGCCGCCTCCTATGGGCCTCACCACTACCCTTCTTGTATGTTGTTTACGTCAATTCTCATGTTTGAATTTGTACTGTTATAATCATTGAATGCAAATAGCCTGTAACGATGCTAGGCGACTAGGTTTTCATTGACAAAATTAACCATGGTTACTTAGTTATAATTAGTCCATAAACTGCAGCTAAGTGCACTTTTTTATAGCTCAAAATCAACTAGCCTTGGTGTATGCTCTGAAGAAGGAAGTGACCACTGAaacacattttaaaacaaaatgtatGACAAATAAATCTCTATCTAGATTAAGCTGAATTTCTCTTTGTATCTTGGATATCAGAGATTTTAGTCATCCATTGCGTTTTCATGTATGTCCCCATTATCGCTTTCTTTAAAGAATTGCATAAATGTAAAGTGTTTAGTGCATGTTGTATTATTAAGAGTATCTTTAACAAATTAAGCCTCTAATATTCATTGAGTTGAATGCTAAGGGCTAAATAATTGAAGATGTTCATAGGCGTCTATTAGGCACATAGATTATATAAATGTCTGAAGCTTAGACGCAGTTGCTCAAGTGATACCTGACTGTTAGGTGTTATATAAATGTGTGAAGCTTGGACAATTATTTAATAGGCGTCTGAGTTTGGCATTTGTTCAATGAGCGTTTGATAGTTGCTTTCTAATTCAATAGACATGTGTTAAATACTTAAATAGACATCCATGTACTGTACGCTTAATTGATAGACATCCATTAAATAGGCATCCTGACCAAGGGTGCAGAATTTCAACTTCAACATTCAATACCCTGTTGTAAAGCAGTATCTACAGTACATAAGCTTGGTGTTTATGCTTTAAGGCACTTGACTATAAATCACATTCTTTAGCGTAGAAGTAAAGAGTAAGGTGggtcatattttttatatttatgcgTGTGAATTTTCGTTAAGAGATGTTTGGTGATCCCTTGTGTTTTCAACTGTGTCTTACTAGTCTTACGCACGTGCGTGCACACACACAAGATGGAAAAATTGTTACTGGAATATAAGAATTGTACGTCTTTACAGTTGCGGGTCTAGGGCACTTGTGCTATGACTTCAGAAACAGCATGGAGCCAGAGCCAGGAAGATGCAGGAGAACAGATGGTAAGAAGTGGAGGTGTTCAAGGGACGTGGTGCCAGAGCAGAAGTACTGCGAGAGACACATGCATCGAGGGAGGAACCGTTCAAGAAAGGCTGTGGAATTAACCGTAAGTGATTCTACTCCGAATGCTGCGATTACCATCGATGAAGACGCTAATAATGGTACCAGTAGCAATGATGTTACTATTGCGAGGATTGGGGTATCTCCTGTTAGTGTTTTGAACAACGGCAGCATAACAGCTTGTCAAACTAGTGTCGTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009402070.1	1.2e-43	PREDICTED: growth-regulating factor 10-like
Swissprot	Q6AWX7.1	2.4e-41	Transcription activator GRF12
trEMBL	A0A804J7E2	8.6e-44	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37740.1	54.92	3e-29	125	AtGRF2;GRF2	growth-regulating factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G02690	AT4G37740.1	122	52	3	75	195	162	281	54.92	3e-29	125
Asa1G02690	AT2G36400.1	116	36	3	78	184	77	187	56.90	5e-29	124
Asa1G02690	AT3G52910.1	120	36	3	78	184	83	194	52.50	3e-28	121

Ortholog group

Species	Genes
Allium cepa	g183094.t1
Allium fistulosum	AfisC8G00964; AfisC8G02552
Allium sativum	Asa1G02690.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g45570.1; LOC_Os02g45570.2; LOC_Os04g48510.1; LOC_Os07g28430.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	78	111	33.5	2.2e-08
PF08879.7	WRC	Domain	142	184	76.7	7.6e-22

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0016818	F	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15601	KDM3; [histone H3]-dimethyl-L-lysine9 demethylase	EC:1.14.11.65	Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network