result

Gene information

Detail information of Asa1G03165

Location

Gene	Chr	Start	End	Strand
Asa1G03165	chr1	860745609	860747006	-

Sequences

CDS

>Asa1G03165.1
ATGAGTAGTACTAATAGAAGTTCTGAAAATTCTATCGATAATCAATCCTGGAAAAATGATGAAGATGAAGAAGAACTAGGTGGTGATCATAATCAAGAAAGAAACCCTAGAAATTTAAATGGAGGAAGCTCGAGTACAAGCACAGTTGAGGAAAGTGAAAGATCAAGAGGGAATTCAGGAGGATCTGTTCGTCAGTATAACCGATCAAAGACTCCTAGGCTAAGGTGGACACCGGATCTTCATCTTTGCTTTGTACATGCAGTTGAGAGACTTGGTGGTCAAGAAAGAGCAACTCCAAAGCTTGTTTTACAGATGATGAATGTTAAAGGACTTAGTATTGCTCATGTCAAGAGCCACTTACAGATGTACAGAAGTAAAAAGATTGATGATTCTGGTCAAGTTATCGGTGAGCAAGCAAATGAGATCCAAGGAAAACAGCAGCAGTATATTAGCAATCTAAGCCACTTTCCAATGCTACATGGAAGACCCTTTGCAACTTCAAGATATGGTACATCCTCTTGGAGCAATCATGGATACTGGGTGCACAATAGATGCCATAATAGAAGTAATAGTGCTACCATCGGATCAAGAGTTTATGATTCTGCGGCAGAAATGATATTTGGAAGATCAATTAATTGTGCATCTATGATGATCAACAATAATCAAGCTAGTACTAGTTCCAATATAAATCAACAATCTGAAGACTTTTTATGGCTTCGAAGGACATCTTCTAATGTGATACAAAGAGAAGGAAGTCCTTGTGCGATAAGAAGAAAAAACAATGACCCCGATTTGGATTTGGACCTATCACTCAATGTTGGATCAAAGAAGGCAAAAGTAGATATCGATTTGAAAGAAGAAGAAGAGGAGGAGGTTGATAGTACCTTATCGCTCTCTTTATTTTCAAATTCAAGGCGTTTACTAGTAAAAAAGGGTTCACAGGAAGAAGGTGAAAGTGGAAAACATAATGAAAGAGTGGCAAGTACTCTTGATCTCACCATATGA

Protein

Gene

>Asa1G03165.1
ATGAGTAGTACTAATAGAAGTTCTGAAAATTCTATCGATAATCAATCCTGGAAAaatgatgaagatgaagaagaactaGGTGGTGATCATAATCAAgaaagaaaccctagaaatttaaATGGAGGAAGCTCGAGTACAAGCACAGTTGAGGAAAGTGAAAGATCAAGAGGGAATTCAGGAGGATCTGTTCGTCAGTATAACCGATCAAAGACTCCTAGGCTAAGGTGGACACCGGATCTTCATCTTTGCTTTGTACATGCAGTTGAGAGACTTGGTGGTCAAGAAAGTGAGTCGGACTTAAAATTTTACAATAGGActcacttcttcttcttcattattttGGAATGTATCAAAATATTTTTCCATACAATATTTTGTCATAATTTGATTGCAGGAGCAACTCCAAAGCTTGTTTTACAGATGATGAATGTTAAAGGACTTAGTATTGCTCATGTCAAGAGCCACTTACAGGTAGTTACTAATTAGCATATGTCTCCAGATTATATAGTTAACTAAGTTGCCTAAATCGTTAACTGATCactttctttcttgttttttttttggttaactGGTAGATGTACAGAAGTAAAAAGATTGATGATTCTGGTCAAGGTACTTGTATTATTGTATAGTTTTATATATCAAGTAATATTGTATTCAAATTAGATATATACATCAATGTATTATATGCTTAATTCAGTTATCGGTGAGCAAGCAAATGAGATCCAAGGAAAACAGCAGCAGTATATTAGCAATCTAAGCCACTTTCCAATGCTACATGGAAGACCCTTTGCAACTTCAAGGTTCTTATATAGTTATTTCTTAAGTATATATGATTGATAATTACATCTCATAATTAATGAATtgttatataatttggatgtttggCTAATTAGATATGGTACATCCTCTTGGAGCAATCATGGATACTGGGTGCACAATAGATGCCATAATAGAAGTAATAGTGCTACCATCGGATCAAGAGTTTATGATTCTGCGGCAGAAATGATATTTGGAAGATCAATTAATTGTGCATCTATGATGATCAACAATAATCAAGCTAGTACTAGTTCCAATATAAATCAACAATCTGAAGACTTTTTATGGCTTCGAAGGACATCTTCTAATGTGATACAAAGAGAAGGAAGTCCTTGTGCGATAAGAAGAAAAAACAATGACCCCGATTTGGATTTGGACCTATCACTCAATGTTGGATCAAAGAAGGCAAAAGTAGATATCgatttgaaagaagaagaagaggaggaggttGATAGTACCTTATCGCtctctttattttcaaattcaaggcGTTTACTAGTAAAAAAGGGTTCACAGGAAGAAGGTGAAAGTGGAAAACATAATGAAAGAGTGGCAAGTACTCTTGATCTCACCATATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252075.1	6.3e-59	probable transcription factor KAN2
Swissprot	Q700D9.2	3.9e-21	Putative Myb family transcription factor At1g14600
trEMBL	A0A5P1FK71	4.6e-59	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38300.1	60.84	1e-38	157		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G03165	AT2G38300.1	143	41	4	44	180	32	165	60.84	1e-38	157
Asa1G03165	AT2G40260.1	121	38	3	60	177	71	188	63.64	1e-36	150
Asa1G03165	AT2G42660.1	69	13	0	63	131	42	110	81.16	2e-28	123

Ortholog group

Species	Genes
Allium cepa	g486368.t1
Allium fistulosum	AfisC3G00531; AfisC3G04281; AfisC4G04451; AfisC6G01531; AfisC8G00149; AfisC8G02032
Allium sativum	Asa1G03163.1; Asa1G03165.1; Asa7G07735.1
Arabidopsis thaliana	AT1G14600.1; AT2G02060.1; AT2G38300.1; AT2G42660.1; AT4G04580.1
Oryza sativa	LOC_Os02g45080.1; LOC_Os04g47890.1; LOC_Os06g45890.1; LOC_Os11g01480.1; LOC_Os12g01490.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	73	124	37.8	1.5e-09

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K06236	COL1A; collagen, type I, alpha	EC:-	PI3K-Akt signaling pathway	ko04151
			ECM-receptor interaction	ko04512
			Focal adhesion	ko04510
			Platelet activation	ko04611
			Relaxin signaling pathway	ko04926
			Protein digestion and absorption	ko04974

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network