result

Gene information

Detail information of Asa1G03566

Location

Gene	Chr	Start	End	Strand
Asa1G03566	chr1	971671980	971674995	-

Sequences

CDS

Protein

Gene

>Asa1G03566.1
ATGGACCCTGCTCTTGGTTCTAACTCCAGCTTGCAGAGCCAACATAATGCTTTTCAGAAAGCAAATACGATGATAACACTTTGTTCTCCCCCACCTCCTCCTTTGCCTGCAATATCAGTAAAAAGTCGGAGGAAGTCTCGTAAAGTTGTCAAGAAAGGTGATGATCAGGATGCTGGTCAAACACCAAAAAGTTCCATTTTTAGGGGAGTCACAAAGTAAGCATCTTGCTGCGTTTACGCTTTGTCGATTTTTTGTAGTAGTTTTGATTTTACAGGGCATAATACAGATTAATATCTATGTGTACTATACCTCATTCCAAATTATTTCTAATGTATTCGAAATGCACGCCATGTCCATGTGATTAATAGGCACATACACACCAGTCGGTATGAAGTTCATTTGTGGGACAAATTTTCTTCAAACCCGAGCCAAAATAAGAGAGGAAAGAAAggtataaaaagaaaactatattTACGTTTGTAACTGTGTATCATTTCCATTGGTTATCTAGAATTTTGATACATTATAAAGATAGTAACATTTAAACCAGTAGCTCTAACTTTTGTGTACATATTTTTTTGCTACTTGTGCTCTAAAATTTTCTGCTGCCTTTGTTGATATCTACTGCTTTATGCTTTTGTGCGGGTGCCTAGTTTATTTAGGTATGTCGTCATTATATATACTTCGTTTGGGTATTGGTAGGTGCATTTCATTAATACTTATATATACTTCGTTTGGGTATTGGTAGGTGCATTTCATTAATACGATATTATTTACTGTATACTTCTTCCAGGTTGCTTTGACAGTGAGGAGGAATCGGCTTACACTTATGATCTTGCAGCACTCAAATGTCTTGGCCCTAACTGTGTTCTCAATTTTCCCGTGAGcgtacaaaattaaaatatatatccatgGAGATTTCTAATGACATATTTGTGTAAAGCACACGTAATAGcagtttttattcatattgttATTTATTTCATCAACTGGAACAAATGCAGTTGCATACATACACGAAGGAATATGCAGAGATGAAGAATGTTTCGAAAAGTGAATACATAGCCAGACTTCATCGCAAAAGCAATGGATTTGCAAGAGGGGATTGCAAGTATCGTGGGGTTACCAAGTATAGTTTTTGCCTTTTTATCTATAAACTTAAATCAAGCATATCATCATGTAAAACATCACACAGCTAAACAGACTGCATAAAAACAATAACATTTCAAGCAGTGCATACATGATAATTAATCTTAtaaaattgtatgattgaaaaTTCATTTTAGAGGCCACAAAAATGGGCAATGGGAGGCAAGGATTGGCAATGTATGTGGCAGAAAGAATCTCTACTTGGGAAGCTTTAGTAAGTTACTAAACAGCTTTGCTCTCTTCTCATTATGATTGCAACATGGATGTTTGTTGAGACGGAAAAAATTGAAAACCTAGAGCACATGATGTAATATCTTAGGTAATACAACTGAATATTGTAATTTGATCTGAACCAACTGGTCGAAGTTTGAGTAATTTTTCTAGTGTTCTAaggttattttgaaattttatctgaTATTTCACTTAAGACATCAATTGTTGATCCACTTTTATAcacatattttacatataaatataaaattagttttaccCACGACGGTGTGAAAATTGACCTAGCTATTAATAATATTGGCAAAATATATGCTTTTCTATTTTGATATTCCCTGGAAAACATTTTCCAAacctattttatttttgaaaataaggcttttctttaaaatattacttccaaatttgaaattgcatcTTCCATAACTCATTCTtcgtattatttaaattaattttacttattaaatattattaaattttgaagaaataaaaaataaatttgtaaaaatgTCGATGATATTTAAAACTGGATTTTatgatttgaagattttatttgaaattggtGGTTTTTGTagttagtaattaattaaaatgaaccctcttatttaaatttcaatttaaataatttcagatATAAAACTGTTTATTGTGAATAGGAGTGGCATCTGCTGGACATTTTAAATCGCAGCGGCGATGTGAAATTTGTGGGGATTATGTTTTGTATATATGTTAATTTTTCCATGAAAAGTTGCTTCTAGACGGTTTCATTTAACCTCCAATTGGAAGGGAAACTTCACTAAACAGCCAGTTAATCtgataaacaaattttcattttgttcgaatttttatgcaaataaatcgCAAAATGAAAATTCGACACCATTACTCAGTATGTCCTTTTTTGCCTTACAATTGAAATTTAGCGTGATTTACACCCCCGTGCACTAGTTTCAGGAATCAAAATTTGAAAGAACATGAATGTGTTGTTGCATAATAAGCTGTTTTGTAATATGTTAAATTCTCAGATAGTGAGGATGAAGCAGCAACAGCCTATGACCTTGCTTCACTACACTACCGTGGACCGAAGGCTGTAACCAATTTCGACATCAGCAAATACGAAAATCCACACTTGCAGTTTCAGCAAATGCGACTACCGTCACCACCACAACTGTACGAACCGTCATTAACTAGATCTATTTTGCCTAATTCTGAGAACTTCAACTGTTCTGAGAACTCGATCAATTCTGGCATCTCTGATACCAAGCCTACAAACACCATAATGGGCACTGCATGTGATGGAAATCTGAACGACACCAAGGATCAGAATGGTTTGATGTTGCAAAATGAGGATATGCACTTGGAAATGGGTAACCAACCGAATGTGGCTCGAAATCAAGGTTCTTCTTCGAATACGTTTGAACAGTTAAGGGATGAAGAGCATTTCAGCTTGGATGGTGCGTTTGATGCTGCACTTTTTGACAAATTTGGTTATGTATCTAACAATAGTGGTTTTCTTGGCATTGATGGGATTGGTGCTGGTTTCCATGGAACTACGAGTGTAGGAGATCAAGTTCCTGGAGTTGCTGATTTTGCAGGATTTTCTGGGAATGAAGGATTTCTCCCGTTTATGCCATTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	KAF6142667.1	2.4e-57	hypothetical protein GIB67_015153
Swissprot	Q6X5Y6.1	2.9e-55	Protein WRINKLED 1
trEMBL	A0A7J7LJ54	1.8e-57	AP2-like factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54320.1	54.82	5e-53	205	ASML1;ATWRI1;WRI;WRI1	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G03566	AT3G54320.1	197	86	1	34	227	33	229	54.82	5e-53	205
Asa1G03566	AT3G54320.1	80	44	1	166	237	66	145	35.00	4e-07	52.8
Asa1G03566	AT3G54320.3	197	86	1	34	227	33	229	54.82	6e-53	205

Ortholog group

Species	Genes
Allium cepa	g171324.t1; g171378.t1
Allium fistulosum	AfisC8G01530; AfisC8G01533; AfisC8G01538
Allium sativum	Asa1G03566.1; Asa3G01401.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g59780.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	66	121	21.0	0.00027
PF00847.17	AP2	Domain	164	215	34.8	1.3e-08

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network