result

Gene information

Detail information of Asa1G04269

Location

Gene	Chr	Start	End	Strand
Asa1G04269	chr1	1158665992	1158667415	+

Sequences

CDS

Protein

Gene

>Asa1G04269.1
ATGCTATATGGGTTTCCAAACGAGCGCTGGGAGGTGACCCTTCCTGCAGAGGAGGTTCCTCCTGAACTTCCAGAGCCCGCGTTAGGAATTAATTTTGCAAGAGATGGAATGCAAGAAAAGGATTGGTTGTCACTGGTTGCTGTGCATAGTGATGCATGGTTGATTGCCGTTGCCTTCTATTTCGGCGCTAGGTTTGGGTTTGACAAGACTGATAGGTTAgtacaaatcctatttttaaattagtttccttatttgatttgatatttcaAAACGAGGTTTGACGATGCAGAAAGCGACTCTTCGGTATGATCAATGACATGCCAACTATATTTGAAGTTGTGAATGGGAAGAATAAACTGAGGACAACTAGTACCAATAGCAGCAATGGCAAACCCAAGACGAACTCAAAGGTGATGAATATATCATTAAACTTTTCACATAACGTTCACTACATCTATTCATGAAACCATAGCTTTGTGCTTTGCAGTCTTTGTCATCTTTCGACGGTAAATGTTCATATGGAAGTTCCACATATGCTGTTTCAGCCATTATAGTATAATCCAGCACGATCTTGCATACGAGTCCATGTTAAAATCATATGCTGCTGTTGATAAGCTCATCAGATTCTCTTGTGATTTATGCTGAAATTATTGCTCAAAGGCACAttatatccccccccccccccccacaacaaAATTCCCTTTTCTCAAAggcacattaaaattaaatgttctttTAGGATACATGGAAGAAAATATGTGCAATTAGTGATTTGCTGCGCAGCTGGGAATAACACTCGAGATCGAATGAACGACTCTTTTTGGTTTCAAAATTAAAAACTTGAACTTTGTTTTGCAAACAGCCCTGTATTTACAGAGAGGGGGTAAGCAGTGGTGATGGTTGTTCAAGCCAGCAGACACCACTTGACCAAAGGATATGTATGTTGgttctcatattcaaatttaacaTCAACTGAGATATACCGTTTTGGGATGTGACACTTCCCCTTAGACCTCTGCGACCTGGACTAGATTGATCACTGTCCATTGTCTGCTGTTATAAACCTACCAAACTCTATTTGCCAATCATGTTtgattacatttctttatgtacaGAAGGCCTCGGAAACTTTGACAAAGAGGACTGCAACGAAGATGACACAACCAAAGGAGGACGAAGGAGAAGAGGACGAAGGTGGCATGGAGGACGAAGGAGAAGAGGAAGCGGAAGACGAGCATGGAGAGACACTGTGTGGTGCATGCGGAGATAACTACTCATCCGATGAGTTTTGGATTGGGTGCGATATATGTGAGAAATGGTACCATGGCAAATGCGTGAAGATCACGCCAGCACGCGCGGAGCACATAAAGCAGTACAAGTGCCCTTCCTGCAGCAACAGTAACAAGCGCGCACGTCCATCCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	RRT73177.1	3.0e-78	hypothetical protein B296_00028969
Swissprot	B8BJV8.1	3.5e-68	PHD finger protein ALFIN-LIKE 8
trEMBL	A0A427AAC3	2.1e-78	PHD-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G20510.1	66.98	4e-67	250	AL5	alfin-like 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G04269	AT5G20510.1	215	62	3	2	212	51	260	66.98	4e-67	250
Asa1G04269	AT3G42790.1	211	58	3	2	210	51	250	66.35	7e-66	246
Asa1G04269	AT2G02470.1	215	60	5	2	212	50	256	66.51	6e-64	240

Ortholog group

Species	Genes
Allium cepa	g305005.t1; g377275.t1; g74834.t1; g96987.t1
Allium fistulosum	AfisC2G01614; AfisC3G00740; AfisC5G03935; AfisC8G00644
Allium sativum	Asa1G04269.1; Asa1G04270.1; Asa2G00700.1; Asa3G02545.1; Asa4G05868.1
Arabidopsis thaliana	AT1G14510.1; AT2G02470.1; AT2G02470.2; AT3G11200.1; AT3G42790.1; AT5G20510.1; AT5G26210.1
Oryza sativa	LOC_Os01g66420.1; LOC_Os01g66420.2; LOC_Os04g36730.1; LOC_Os05g34640.1; LOC_Os07g41740.1; LOC_Os11g14010.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12165.5	DUF3594	Family	1	90	146.4	2.8e-43
PF00628.26	PHD	Domain	157	205	41.2	1e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0042393	F	histone binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008270	F	zinc ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11728	BPTF, E(bx); nucleosome-remodeling factor subunit BPTF	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network