result

Gene information

Detail information of Asa1G04590

Location

Gene	Chr	Start	End	Strand
Asa1G04590	chr1	1229202735	1229207463	+

Sequences

CDS

Protein

Gene

>Asa1G04590.1
ATGGCCATGGTGGTGAGCAGGCAAGGGCAAAATGGGGGCAGTCAGCAGCAGATAGACGCGGGAAAGTACGTTAGGTACACACCCGAGCAAGTAGAAGCTCTTGAAAGGGTGTACAGCGAATGCCCAAAACCTAGCTCGATTCGAAGGCAGCAACTCATTCGGGAGTGCCCTATCTTGTCTAATATTGAGCCAAAACAGATCAAAGTTTGGTTCCAGAATCGAAGGTTTTAACATTTGTCACTTTTAAAATTTGCTTTTGGTTATAACCGTGCTTgcgttcaaattctgttttttgtttttgttggttAGTAGTAGTTTTGACATTAATTTCCCAAGATCTCTTAATATGATTGCCTTAGATATGGCAGGTTTAACGTAATGTGTTTGGTAGCATTCTAATTTTTTGTacgaattttcacatattttataataaagatatTATTTGTCTTAGGTTTGAATTGATCGTATATGAATTCCAGTTTGCcttataattttattattgtttcGAAAGTATGCTGTCAAAGAAGTATATTttattgctattttagtttgtcaTATAACTTGTTCCAGTCAAATATTGTACAGTAGCTACCTAAACGTGAAATGTACATATGTACCAATATCTATTAGTTTGTGTTTTTGAAAATATCCATGTAAAAACAAGGGTATAAATTCCGGTTATTGAAGCAACTAAATAATTCATGCAAAAATTGCTACTTTCATACTGTGTAGAGGAGCTTGAATCTTGAGTAAAATCGTATGTAATGGTTGACAATTTGCATATAGATGTCGCGAGAAGCAAAGAAAGGAGGCATCTCGTCTGCAGACTGTAAACAGAAAGTTAAATGCAATGAACAAGCTATTGATGGAGGAGAATGATCGCCTTCAGAAACAAGTGTCTCATCTTGTTTATGAAAATGGCTATATGCGGCAACGAGTGCACACTGTAAGAATCATAGATTCTTTACtattttttcaaaacatgaaatcATAGTCTTGTTACAAAgatatacattattttaatatgaatgtCTCTGGTAAACGAGTTACTTGATCTATATACTAAAAAGAACGTTCAATTGCCATATAACATTGATTTCAACTGAACTAATCAAATAGCCTGTAAAATTTGTTTTTTGTAACAGTGCAGTTCTGTTACTTTATTCCAACTACATACAGGTTTATGTGATCGGTTTCTAATGTCCTATCTTGAAAAATACACAGCCTGCTGCTGCTACCACAGATAATAGCTGTGATTCTGTGGTGTCAAGTGGTTTACACCATCAACAGCAAAATCTGACCTCTCAGCAACCCCAAAGGGATGCTAATAACCCAGCAGGGTAATTCTACAACCACACACACGCATGTATATTGCTGTTATAGTTATACATAATTTTGATTCTAACtgatgtatttttgttttaatacaGTCTACTCGCAATAGCTGAGGAGACGATGGCTGAGTTCCTGTCCAAGGCGACTGGAACCGCCATTGATTGGGTGCAGATGGTTGGAATGAAGGTTGATTCTCCTTTCAATTTTGCTTTTGTGCACTTCATTTCCcagttctaatttctttattttctcTACATAGCCTGGTCCGGATTCCATTGGAATCATTGCAGTATCACACAACTGTTGTGGTGTTGCAGCTAGAGCGTGCGGTCTTGTGAGTCTCGAACCCACAAAGGTGATTCATCCTTCTTCAATATTTTTGATTTATAGATTGTTGTTATTTAGGTGGCTTTAATAGTAGTTTAATAGGTTGCTGAAACGCTTAAAGATCGCTTATCGTGGTATCGTGAGTGCCGTTCAGTTAACGTGGCTACGGTTATACCTACTGGAAATGGTGGTAACATTGAAATTCTTTATATGCAGGTAACCAGTTCATCTTCTATTAGATGCAAGAAATATTGTAAGAAGTATTGCTAGAAAATTATGTATCCTCTTCCTCTTTAATTCCAACAGTATATATGTGTACATGTGCACATTTTGGTTTTAACTGATAACTCCTAATATCTATTATAGACGTATGCGCCAACAACTTTGGCACCAGCGCGTGACTTTTGGACGCTTAGGTACACAACTGGGCTTGATGATGGTAGCCTTGTGGTAAATTATATAATCGATCTTTTAATGCTATTGGAGAAAAATGAGGACAATAACTAAATTACTTTGTTATATTCTAATAGATATGCGAGAGATCGTTGAATTCTTCAACTGGTGGCCCAGCGGGGCCTGTTGTTCCGAACTTTGTGAGGGCTGAGATGTTGCCAAGTGGTTATTTAATCAGGCCCTGTGATGGAGGTGGATCCATGATCCACATAGTTGATCATCTTGATTTTCATGTTAAGTCTTGCATATTACTATGTATATAGCACTAATACAAATGTCTACTTATCCCCCCTGCTCGGTTTGATTCATTACTAATATGAATGTGTGCTCTTTGGGTTTAGGCTGGCCGAGTTCCTGAAGTCCTCCGACCTTTATATGAATCACCAAAGATACTAGCACAGAAAATGACTATTGCTGTGAGTTCTCATGTACATCGTATAGAGCGTAATTGTATGAACCAAAATGTGCGCTACTTACTGTTGTGCTTTATATTTGCAGGCGTTACATCATATTCGGCAGATTTCTCAAGAAACTGGTggggatgttgcatatggacgtcAGCCAGCAGTATCTAGAATGTTCTGCCAGCGTCTAAGCAAGCAAGCCCTCAAACTTTTTTTTTGGGATTACTAATCAGCATCAGATTGTtaatataactttcattttttgAAATGACGTATCTATAGAGGTTTCAACGATGCTGTTAATGGATTTCAAGACGATGGTTGGACTTTGCAAAACAGCGATGGAATCGATGACGTTACTATCATGATCAATTCATCACCAAATAAGCTTCTAGAATCGCATGCCACCTCTGCACTTTATCCTTCTTCTGGGGGCATCTTATGCGCAAAAGCTTCCATGCTTTTGCAGGTACTGTTCTATGCCTAACATTCTACATTCTCACGCACCTGTGCCTTTTTTCCTTCAGCCATGAAGTTTAAAGTAACTTTTTTTCTGGTGTAGAATGTGCCTCCTGGATTGCTTGTTCGGTTCATAAGGGAGCATAGATCCGAGTGGGCTGATTATGGTGTAGATGCATATTCAGCTGCGTCTGTAAGAACCAGTCCCTTATTCTGTTCCAAGAGTTGGAGCATGTAATGGTTTGTATGCTGGTCAAGTTATGTTGCCTCTTTGCCATACTATAGAAAATGAAGAGGTATCATGCTGTAGTTATTTTGACTACTTCCcttgttttatatcaaagtatttCATATCCACTAATACAACGGACACACCATGTTTGAAAATGTAGTTCCTGGAAGTTGTAAGGCTGGAAAGTCATGGATTTAACCAGGAAACTGTTATTACAAGGGATATGTTTCTGCTACAGGTTGGCTTTACATATTCAAAAAATTACTGTATATTTAATAAGTATGTACTAATGCGGCATTTTGTGCATGGCAGCTATGTAGTGGAATGGATGAGAATTCAGTCAATTCATGCGCTCAACTTGTGTTTGCTCCTATAGATGAAGCTTTTGCGGATGATGTGCATTTGCTTCCCTCAGGCTTCCGTGTTATTCCACTTGAATCGAAAATGGTGAGATATCTTCTGCATGCAACCACCACCACCAGGTGTAAACCTTTTGCCGATAACATTGTAATCTACACAGGATTTGCCTACTGGGAATAGAACACTCGACCTTGCTTCAGCTCTGGAAGTAGGAACTGGCTCTATATCTACTGCTGCTACTAAAAACACTTCGCATACGTACAACTGTAGATCTGTGCTTACAATTGCCTTCCAGTTCACTTACGAGGATCACCTAAGGGAAAATGTGGCATCTATGGCTAGAGACTATGTTAGGAACATCATAGTCTCTGTTCAAAAAGTTGCTCTAGCAATATCACCATCACAAATATGCAACAGTCGCCTAGGAGAAAATCTCTTGCCTGCTTCGCCTGAAGCTCGCACTCTTGCTCGCTGGATTTCGAAAAGCTATAGGTTCCTACCATTGCTTGTTATGCATTTTAGTTATTTTGTCTAGAAACTAAATCTGATAGCAGTTATTTGATTTAGGTTTCATACTGGAGCTAGTCTTCTACGAACAGAGCCTTTAGATGATGATACTTTGTTGCAAAACCTGTGGCGGCATTCTGACTCCATAATGTGCTGCTCTCTCAAGGCAAGCTAACTAATTTCTACACATACATCCTGGTTTCCACTGAAAATTTGCAGTTTTTTCTGTGAACATTAGAAACGTCTACTAAAATATTGTACTAGCAGGCGTCACCAGTGTTCACATTCTCTAATCAATCCGGACTAGACATGCTGGAAACAACCCTTATTGCACTTCAAGACTTGACCCTAGACAAAATGCTTGATGACAATGGTCGCAAAGTGTTGTGCCAGGAGTTTCCGAAAATCATGCAGCAGGTTTTGTGAAAACTCATACATTATAGCGTGTTGCTTTATTTTTTCCTTTCCTCTTTTGTGTGATGGATTATGTGAAATATGCATGCAGGGCTATGCGTATTTGCCAGGTGGGATATGCATGTCGAGCATGGGGAGGCCAGTGTCGTATGAACAAGCTGTAGCCTGGAAAGTTCTGAATGATGAGGAAGCACATCATTGCTTAGCTTTTACATTTGTGAACTGGTCTTTTGTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273236.1	0.0e+00	homeobox-leucine zipper protein HOX32-like
Swissprot	Q6AST1.1	0.0e+00	OsHox32
trEMBL	I0IUI5	0.0e+00	Class III homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G34710.1	64.69	0.0	1064	ATHB-14;ATHB14;PHB;PHB-1D	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
Asa1G04590	AT2G34710.1	861	215	16	1	783	3	852	64.69	1064
Asa1G04590	AT1G30490.1	840	213	13	18	783	17	841	64.05	1061
Asa1G04590	AT1G52150.1	832	246	11	18	783	13	836	61.54	1020

Ortholog group

Species	Genes
Allium cepa	g239225.t1; g376311.t1
Allium fistulosum	AfisC1G01714; AfisC5G03332; AfisC8G00145
Allium sativum	Asa1G04590.1; Asa4G03996.1; Asa6G04755.1; Asa7G01570.1
Arabidopsis thaliana	AT1G30490.1; AT2G34710.1; AT5G60690.1
Oryza sativa	LOC_Os03g01890.1; LOC_Os03g01890.2; LOC_Os03g43930.1; LOC_Os03g43930.2; LOC_Os10g33960.1; LOC_Os10g33960.2; LOC_Os12g41860.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	23	80	57.4	8.3e-16
PF01852.16	START	Domain	171	378	152.1	1.2e-44
PF08670.8	MEKHLA	Domain	640	782	168.5	6.8e-50

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network