Detail information of Asa1G04656


Location
GeneChrStartEndStrand
Asa1G04656chr112458293161245845945+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008776138.10.0e+00DDT domain-containing protein PTM-like isoform X1
SwissprotF4JYC8.17.5e-224PHD type transcription factor with transmembrane domains
trEMBLA0A8B7BGD40.0e+00DDT domain-containing protein PTM-like isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G35210.137.755e-138 489PTMmetalloendopeptidases;zinc ion binding;DNA binding

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag128645.t1
Allium fistulosumAfisC8G00047
Allium sativumAsa1G04656.1
Arabidopsis thalianaAT5G22760.1; AT5G35210.1; AT5G35210.2
Oryza sativaLOC_Os11g05130.1; LOC_Os11g05130.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02791.14DDTFamily26231647.91.1e-12
PF15612.3WHIM1Family37440533.22.5e-08

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11728BPTF, E(bx); nucleosome-remodeling factor subunit BPTFEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.