result

Gene information

Detail information of Asa2G01024

Location

Gene	Chr	Start	End	Strand
Asa2G01024	chr2	298534364	298536069	-

Sequences

CDS

Protein

Gene

>Asa2G01024.1
ATGATGACCAAGCAGTTGATCCAAGAAGGAATAGATACTTGGCACTCAATTTCTGGAGACAGCCCTAGTGTTCTTTGGAATCATGCAGTTCCTGAGATAAACAAACGATTCATGAAGATTTCACATTCTACGACTCGAAGTTTGTCAGGAAAGGTGACAATATTTTCTTCTAATTGAACCATTTTAGTGCTTAATATCATTAAATCTTTGTCATATTTCGATCATTTAGGACTTGGAAGTATTGCGGGAAATCGCAGGATGTGGTGAAGAATTATCCCATGAAAATTTCGATAAATTGTGGTGTTGGCTATATCCTGTAGCCCTTTCTTTatcaaagaaaagaatacattATTTGTGGGAATGCACAAAGCCGTTATGGATTGAAGGATTGATCAGAAACGTAGAGGCTGAGAATTCACTGAATGGTTCAAGAGGATTGCAAAAGCCCGGAACATTTATACTGAGGTTTCCTACATCTAGAAGCTGGCCTCACCCAGATGCCGGTAGCCTCGTGGTTACATATGTTGGCGCTGATTATAAACTTCATCATAAGCTTCTTTCTCTTGATCTTAGGTATGTTTCAAATTTTGATATGGTTATTATGTTGAATGTTTTCCTTATCGTGTGTTTTTTATACCAAGGAATTATCTAGCTCACCCACTTGCCATGTGATTACACTTTTATCTACCATGGAATATAACTAATCTTGCACAATTTCATCCCTCTGACCTTGGTCTAAAAAATAATAATGGACGTTTTTGAGTCACTGATTTTGCATTTGTGTTCTTTTATTCCATGGTTTTAAATATGATTCTCAAAATCTAGTCCTGGTTCTCAAAACTATTTGATTGATCTCTTCAAGAATAAAAATGTTCACCCCTATCATCTCAAACTTAAATTTACAACAGATCAGCTTTATTAGGTTCTTgtttattcgatttttttttttttttttttttaaatatcggtTTACTTTTGGCATATTAAACAAAACAGGTTAACTATTGATAATTATAATAATGTAGTTACTTTGAGAAGTTAAATAAGTCTAAGTTTGTATTTTCTTATTGCTTACAGTAAATTatgcatttttgaaagaaaaaaaatatatatacacaatatgcAATTATACCAGCAAACATAAGGTCCCTACGTTATATTCCTAGCGTCACTCCCATAACTTTGTACTCTACCAAGTTCTTTTAGAATGTATATACAAGTCAACTTAATGCTTTCATAATGTGCTTATCAATTTCCCATTTTTCACCTTTTCCAGTTCCAAGGACGATGGAGAGCAAAATACAAAACCATTGCAGAtgatgttactggaagagcctgaaCTATCACAAATAGGGAGGCAAGCTATCATGATGTTACTCACTCATATATCAcacttttattataatatataataatatctggAGTGCagtcaaaataaaaatgatgtttatcCTATTCTTCCAGCCTTTTTTCATGATAAGGATTAGGGACAATGAGTATAAAATTTTccaaattgtttggtgaaattttcaatttattggATGCATCAAAACTAGTGTCTAGTTTGAGTCcatttgatttcttttgaactgAGCTTAAACATTTATACGGATGATTCAGTCGGACTGATTCTCACCTCTACTCAATTTATCCATGACTTACGAAAGTGATTTTGCAGGGTTGTTCGACATGGCACTTTGTGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260778.1	7.9e-81	uncharacterized protein LOC109837104
Swissprot	Q56XZ1.1	1.0e-56	STAT-type linker-SH2 domain factor B
trEMBL	A0A5P1F1X9	5.7e-81	SH2 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G78540.1	53.06	5e-57	217	ATSHB;SHB;STATLB	SH2 domain protein B

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa2G01024	AT1G78540.1	196	87	2	2	196	475	666	53.06	5e-57	217
Asa2G01024	AT1G78540.2	195	86	2	2	195	475	665	53.33	1e-56	215
Asa2G01024	AT1G17040.2	196	95	2	2	196	458	649	48.98	4e-53	204

Ortholog group

Species	Genes
Allium cepa	g252220.t1
Allium fistulosum	AfisC3G01166
Allium sativum	Asa2G01024.1; Asa2G01025.1; Asa3G03236.1
Arabidopsis thaliana	AT1G17040.1; AT1G17040.2; AT1G78540.1; AT1G78540.2
Oryza sativa	LOC_Os10g41770.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0004871	F	signal transducer activity
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K05356	SPS, sds; all-trans-nonaprenyl-diphosphate synthase	EC:2.5.1.84 2.5.1.85	Terpenoid backbone biosynthesis	ko00900

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network