Detail information of Asa2G02496


Location
GeneChrStartEndStrand
Asa2G02496chr2682145954682170796+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020244398.11.1e-202LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 19-like
SwissprotQ9SIV5.35.0e-136Protein Needed for RDR2-independent DNA methylation
trEMBLA0A8B8IYC11.4e-180zinc finger CCCH domain-containing protein 19-like isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G16485.149.919e-159 558NERDnucleic acid binding;zinc ion binding;DNA binding

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag217150.t1; g217151.t1
Allium fistulosumAfisC3G03169
Allium sativumAsa2G02496.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02201.15SWIBDomain49857163.01.6e-17
PF03126.15Plus-3Domain63974280.01.5e-22
PF02213.13GYFDomain94198544.86.7e-12

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003677FDNA binding
GO:0046872Fmetal ion binding
GO:0005634Cnucleus
GO:0016570Phistone modification
GO:0006352PDNA-templated transcription, initiation
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K01062PLA2G7, PAFAH; platelet-activating factor acetylhydrolaseEC:3.1.1.47 Ether lipid metabolismko00565

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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