Detail information of Asa2G03871


Location
GeneChrStartEndStrand
Asa2G03871chr210444606121044461127+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrGER33865.18.1e-42nuclear factor Y
SwissprotQ8LCG7.22.4e-38Transcriptional activator HAP5B
trEMBLA0A5A7PLV85.8e-42Nuclear factor Y

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G56170.160.312e-42 167ATHAP5B;HAP5B;NF-YC2nuclear factor Y, subunit C2

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag160525.t1
Allium fistulosumAfisC3G04685; AfisC6G05579; AfisC7G01210
Allium sativumAsa0G02969.1; Asa2G03862.1; Asa2G03869.1; Asa2G03871.1; Asa2G03873.1; Asa3G03870.1; Asa8G01674.1
Arabidopsis thalianaAT1G56170.1; AT1G56170.2
Oryza sativaLOC_Os02g07450.1; LOC_Os02g07450.2; LOC_Os06g45640.1; LOC_Os08g38780.1; LOC_Os09g30310.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00808.20CBFD_NFYB_HMFDomain3910280.47.6e-23

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0016602CCCAAT-binding factor complex
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08066NFYC, HAP5; nuclear transcription factor Y, gammaEC:- Antigen processing and presentationko04612

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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