result

Gene information

Detail information of Asa2G04358

Location

Gene	Chr	Start	End	Strand
Asa2G04358	chr2	1181998216	1182000691	+

Sequences

CDS

Protein

Gene

>Asa2G04358.1
ATGCCAGAATCACCTCCAGCAAAGAAGATTAAGAAAAGCGAAGATGATGTTTTGGAACTGCTGAGTAAGTATAGTACAACCACAATTCTCTCCATTCTTCATGAGATACATGAGTATACCGTGAATAATCCTGATTCCGTGGAAATAGATTGGATACAACTATGTAAAAATACATGTACAGGCATCTCAAATGTTCGGGAATATcagatgttatggcgaaatttagcTTACCAGCATCCTATAGTGGATCTTAAAAATGAAGCTGAGATTATGGATGATAACAGTGATCTGGAAATCCAAATAGAAGCTGATCCACAGCCAACTGCTGAAGAGGAACTCAATGCTAAAGAATGTGTTAAGGTAAAGGTCATGTTGTATGGAAAATGCTTATTTGTGTAAGACCGACAAATGTTTAAAATAGCGAACAGAAAGAAACAAATATGAAACCTTTCAACATCATCTATAAGGATACATGTTATATGAGAGCGTTCCGCTGCACTCCTATTTTACAGCACACTTTTTGCACcgcacatttatatttgaataagtTAGTGAGTGAAGAGAGAGTCAGTGGGAgaacaaagaaaagagattttgCGATGGAAATAAGGGGACATGTAAGAGTGTTGAAGTCTTTGAGATGCAACAGAACACTTCTCATGTTAAATTGTTAATGCAAATTGGAGTAAAATATATTGGATGGATACTTGACATATTATCATGATAATAGGAAAACAAAGACCATATTGAATATTTTCTACGGTTTTCATGCTTACTAGACATCAAATTGTTAGCGACCATGTGCCCTTACATATATTGAAGTATAGCCAGTGGGTAGAAACGGTAATAGGTATGGAAAAGCTGGAGGATATTAATTGAGTGTTGCTAAAGGCACCTCAATTTTCTGTTCCTAATACGATTGCTAAAATGTACCGTaaaatttacaatatttttttcctcctaatattgattattttttactTATCAAATagatcaaattcttttttttttctcgcACAGCGAACAAACTACTGACCAAGACTGTATTCAACGTCAATCGACCATTGAACAGCTATGGTTCGATGGTCGATGGGCGTGGAAAATGGTATTGATCGTCGGTTGTTCTGGTGCAAAAATGTGAAATGACTTTGTGCTAGGAAGCACACAAATTTAATttcgtttattattatttttctatggtGTTAGAATGAGGAAAACTAGGTGCTCTTAGCAACACGGTATTAATTTGTCAATTGTGACACTATACCCCAACTTCATTACAAACAACTACTTGTTTGAGTTATTCCACAACTGTTCAACTTAGTGAGAAAAATATGTCTGAATTCCAAacttatattatattatgtataataATGCCCATTACTATATCTTGACCgagatatttaattttcattattcCAGTGTTTAGAAAACAAACAAAGGATTGGAAAAATAGGTTGCCACTGAAACAGCTGAATCACCCATCTTTGATAATGTTGACCATACATGGTTCTAACACAACTTCTAAATGTGTTGGCTGTACCCGTGAATCTGCTTATCCGCATCATATTTACCaatatgattaattaatattattcaaaataatgaaCAGACGTTACTTTCTGCTTCTATTCCTCGTCTAAGCTCAGTAGACGAGGACATGCATAATGGTTTACCATTGCTTGATTCGCCTGATAAGCAAAAGCCAGTCCAAACTGTGGATGAAGGGGATGGAAATGGACATCCTAATGGCAAGAAGAAAAGGCAGCCTTGGACCAAAGAAGAAGACAATGACCTAATAGAACTTGTAAAAAAATACGGCGAAGGAAATTGGACAAACATTCCAAAATGCGATTTTAAGCACAACAGAACTCCTTCTCAACTATCTCAGAGATGGACTCTTCTTCGGAAAAAAGGTTGCAGCATAAACAATGGGGATGGAGCTAAATGCAGCAGCTTAACCATAAGTGATGAGAGGTTAGCAGCAACACAGAAAGCTATTTCTATGGCCATAGACATGCCAATGACTGGAAGCAAATCAGTGCATTCATTAAGCCAATCACAGGACAAAACAACACctaatattttcagaaaatcacACCCACTTCTCAAGAAAACATCATTTCCTACAACAAAGCATACACTGAGGCCCAACTCTCTAATACAAGCTGCTGCCTTTGCTGCTGGTGGGCGCATAGCAAATCCTTCAACTGCTGCCTCACTCCTAAAGGCTGCACAATCTAAAAATGCAGTTCGTATAGGACCTGGACTTCAAATATGTTCAAGTATACCTAATAATGGTAGTACTAATGCATCCACGAGTCAATCAATTGTACCTTCACCAGCTCTAACTTCATCTGGTTCAAGCTTTGGCACGACTTTGAGTTCTATGAAGTCAGTAGATTCCAAGGATGAAGCAGCAAAAAATGCTGAGAAAAAGATTGTGGCCAGTGATACAGTAATGATAGTACCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245231.1	2.4e-76	uncharacterized protein LOC109823368
Swissprot	P10244.1	3.1e-04	Myb-like protein 2
trEMBL	A0A5P1E711	1.7e-76	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G58220.1	33.83	3e-38	155		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa2G04358	AT1G58220.1	269	142	8	13	254	15	274	33.83	3e-38	155
Asa2G04358	AT1G09710.1	239	121	3	13	221	17	250	34.73	4e-37	152
Asa2G04358	AT1G09710.2	239	121	3	13	221	17	250	34.73	4e-37	152

Ortholog group

Species	Genes
Allium cepa	g295470.t1; g444149.t1
Allium fistulosum	AfisC3G05238; AfisC4G00053
Allium sativum	Asa1G01185.1; Asa2G04349.1; Asa2G04358.1; Asa3G02166.1; Asa6G04425.1
Arabidopsis thaliana	AT1G09710.1; AT1G09710.2; AT1G58220.1
Oryza sativa	LOC_Os02g34630.1; LOC_Os02g34630.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	171	216	39.6	3.9e-10

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11110	TERF1, TRF1; telomeric repeat-binding factor 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network