result

Gene information

Detail information of Asa2G05292

Location

Gene	Chr	Start	End	Strand
Asa2G05292	chr2	1450682101	1450684598	-

Sequences

CDS

>Asa2G05292.1
ATGGCATTCGAGTATAACAACCTCTCTTTTGATCATGAGAATTCCTTTCAGTTTTCTTGTGATCAAACAAGGCAATTCGATTGTAGCAGTCAGTATGCAGCTTCAGCTCACAGGCATATCCCTGAAAAGCGGCATTTTCCAGATATGCCACCTACACAAGATGATAATTGTTTGAGCAATGATGAATATACAAGGACAGAGAATAATAGCAAACGATCAGTTGGCGATGATGATGAAAAATCTCAGACTGATGCAAAACGCAGACGTCAAGCAGAGTACATTGAGAATTCTGATGATTTGAATCATGTCGATCCATTAATCCACCATATATCATTTTTCCCTGGATACTACGAGGATTTCCACCAATCAGTTCAATGCAATCAGTTGGAAGAGAGTGATTCATATAGTTTAGAATGTCTTCCTAGAAAACTTGTATCCATAGGACCCAACCATCAAGCAGAAATACCTGACTTGCAATCCAACCTTGAAAGCACTGATGAAGACATTAACAACAATAAATGGCTTGGAAATTACATCGATCCAGTGCCAAATTTAATCTACCCAAATACCATAGAATGTCAATGTTTGGACAGAGGTTCCATTACATGCGTTAGACAACATGTAATGGAAGCAAGAGAGCAACTAAAGAACATATACGGATACAAGCGTTTTGTAGAACTTGGACTTTCTGAAATGGGAGAACAGGTTGTTTCAAACTGGACAGAGGAGGAAGAGAAGCAATTCATTGAAGTTGTGATGTCAAATCCTGTATCAGCAGGTAGAAATTTCTGGGAAGTTCTGCCCAGTGCATTTCCGTTTAGAAGCAGGAAAGAGCTCGTTAGCTATTACTTCAACGTCTTCATACTTCGTAAGCGGGCAGAGCAGAATCGATCAAGCTTGTTAGATATCGACAGTGATAACGATGAGTGGTTAGATGGAGAAGCTGAAGAAAACGAATCTGGATTGGAATTGCCTGAAGGTACCGAAGTAAAGAAAGATGGTAATGGAGTTGATATTCATGAAGGAACTGAATCTGATAACGACAACGAGAATGCTGAAAAGAGCAGTGATTTTGATTGTAGTTTGCAAGTACACGACGGTTCGTGTACTTCGTATGATCATGAAAATGACAACCATTGCGACTCGAAATTGTTGGATGTTGATGCAATTGAAGAGGTCGTTGGAGGTGACTCGGTTGTAAAAGAAAGTAAGAGCTAA

Protein

Gene

>Asa2G05292.1
ATGGCATTCGAGTATAACAACCTCTCTTTTGATCATGAGAATTCCTTTCAGTTTTCTTGTGATCAAACAAGGCAATTCGATTGTAGCAGTCAGTATGCAGCTTCAGCTCACAGGCATATCCCTGAAAAGCGGCATTTTCCAGGTATATAAAGACATGCAgtgatatttttaaatcaaaatatcatacatcaagacttttatttatttatttggatgtggAATTGACTAGTGTACTGGTTTGTTTTACATGTAGATATGCCACCTACACAAGATGATAATTGTTTGAGCAATGATGAATATACAAGGACAGAGAATAATAGCAAACGATCAGTTGGCGATGATGATGAAAAATCTCAGACTGATGCAAAACGCAGACGTCAAGCAGAGTGtatgtatacattttttttttctttttttcttctttttttcctttttcaatgttAAGCACAAAACCAGCCTTGAATTTTATCTGCTGTTCCCTTTGATCAGTTGTTAGCAAAACACTTGTACATATTTTCTATTTGAAGATAgtacatttcaatttcaatcatGAATTCATGCATCCAGTTCAAAAAATCTACAGGATGTACAATGAGATTGAAATATAGCTATTAAACATTGAACCATTGGTTTTGCTAATATGTCATGTGCCTAGTAAGAAATGTTAGCAGTGTTATTTTACCAAACAGTCGTaccataattatttttattttctgcaacaAGTTTTTAGAAATATGTTCGCAGATTTACCAGATTGGCATTGTTGATCATATGATGTTCGtctttattttatgcacttgtCAAGTAGGTGCATTGTAGATACAAATTACTAAGTTGAAAATTAATGTCTATATGGGTTAGTTGTAAAAAGAGGCAGTGTTTCCATCTGATGATCCTTACTTTGAAACTTTGTAGTCCTATTTTTTACTGCTCATTGTAAGAATATAAGGCTGTCAATGGATAAAGATGCAACATGCGGAAAAATGGATGCAGATACAAAGacatccgcatccaaaaattatccgtccGGTTAGTTCATGTATATTTTAGTATAGTAAAAGgcatatgtttattattttttattaagttataaattcatatttcatgCACTAAAAGTGTATTAACAATTCAAGagtcaaaactatttttttatcatcatatttgtttatttttaacatttttgatAATCAATGAGATTAAGAAAAGTTCATGTTAAACTAATTTGTTTgatttatgtttcttgatttattgACCGTTGACGGATGAAATAATTATTTGATGTTCGTCGTTATTCGTAGATGTGGatatctgatatttgaaaatgatttcagataCAAATACGGTATTATGTGCATTCGAAAGCATCTGTCGGTATTATGTGCATTCGAAAGCATCTGTCGGTATTATGTGcatttgaaataattataagaaTCTTTGATATAGTGTGCAGGAATTATATTTATAGAGACTAGCGCTTTAAAGTTTTATTGTTAGATATACTCATATTTTGTTGTATAACagatgtaaattaaataaataaagctttTTCTTCTTCAGACATTGAGAATTCTGATGATTTGAATCATGTCGATCCATTAATCCACCATATATCATTTTTCCCTGGATACTACGAGGATTTCCACCAATCAGTTCAATGCAATCAGTTGGAAGAGAGTGATTCATATAGTTTAGAATGTCTTCCTAGAAAACTTGTATCCATAGGACCCAACCATCAAGCAGAAATACCTGACTTGCAATCCAACCTTGAAAGCACTGATGAAGACATTAACAACAATAAATGGCTTGGAAATTACATCGATCCAGTGCCAAATTTAATCTACCCAAATACCATAGAATGTCAATGTTTGGACAGAGGTTCCATTACATGCGTTAGACAACATGTAATGGAAGCAAGAGAGCAACTAAAGAACATATACGGATACAAGCGTTTTGTAGAACTTGGACTTTCTGAAATGGGAGAACAGGTTGTTTCAAACTGGACAGAGGAGGAAGAGAAGCAATTCATTGAAGTTGTGATGTCAAATCCTGTATCAGCAGGTAGAAATTTCTGGGAAGTTCTGCCCAGTGCATTTCCGTTTAGAAGCAGGAAAGAGCTCGTTAGCTATTACTTCAACGTCTTCATACTTCGTAAGCGGGCAGAGCAGAATCGATCAAGCTTGTTAGATATCGACAGTGATAACGATGAGTGGTTAGATGGAGAAGCTGAAGAAAACGAATCTGGATTGGAATTGCCTGAAGGTACCGAAGTAAAGAAAGATGGTAATGGAGTTGATATTCATGAAGGAACTGAATCTGATAACGACAACGAGAATGCTGAAAAGAGCAGTGATTTTGATTGTAGTTTGCAAGTACACGACGGTTCGTGTACTTCGTATGATCATGAAAATGACAACCATTGCGACTCGAAATTGTTGGATGTTGATGCAATTGAAGAGGTCGTTGGAGGTGACTCGGTTGTAAAAGAAAGTAAGAGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240915.1	2.0e-59	uncharacterized protein LOC109819569
Swissprot	Q9LDD4.1	1.5e-22	ARID and ELM2 domain-containing protein 2
trEMBL	K4A912	4.0e-49	SANT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03470.1	53.89	3e-47	186		ELM2 domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa2G05292	AT2G03470.2	180	72	3	141	310	118	296	53.89	3e-47	186
Asa2G05292	AT2G03470.1	180	72	3	141	310	119	297	53.89	3e-47	186
Asa2G05292	AT1G13880.1	191	85	3	131	310	114	303	49.21	2e-43	173

Ortholog group

Species	Genes
Allium cepa	g251509.t1; g255935.t1; g255950.t1; g431580.t1
Allium fistulosum	AfisC1G08990; AfisC2G07602; AfisC3G02184
Allium sativum	Asa2G05292.1; Asa5G03308.1
Arabidopsis thaliana	AT1G13880.1; AT1G26580.1; AT2G03470.1; AT2G03470.2
Oryza sativa	LOC_Os03g31230.1; LOC_Os03g31230.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	239	286	27.4	2.6e-06

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K02470	gyrB; DNA gyrase subunit B	EC:5.6.2.2	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network