Detail information of Asa2G05513


Location
GeneChrStartEndStrand
Asa2G05513chr215133965461513397319+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrVAH91002.14.8e-30unnamed protein product
SwissprotQ94C69.18.4e-24Cold shock domain-containing protein 3
trEMBLA0A7J6W6998.4e-29Cold shock protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G36020.150.372e-54 209AtCSP1;CSDP1;CSP1cold shock domain protein 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag10454.t1; g120176.t1; g148718.t1; g248655.t1; g248657.t1; g348082.t1; g453915.t1
Allium fistulosumAfisC2G05726; AfisC3G00629; AfisC3G01992; AfisC3G06581; AfisC4G03750; AfisC8G03465
Allium sativumAsa1G01832.1; Asa1G01835.1; Asa1G01836.1; Asa2G01676.1; Asa2G05513.1; Asa4G03011.1; Asa4G03092.1; Asa5G05426.1; Asa6G03182.1; Asa7G07413.1
Arabidopsis thalianaAT2G17870.1; AT2G21060.1; AT4G38680.1
Oryza sativaLOC_Os01g36570.1; LOC_Os02g02870.1; LOC_Os08g03520.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00313.19CSDDomain56985.21.8e-24
PF00098.20zf-CCHCDomain9110730.71.9e-07
PF00098.20zf-CCHCDomain12013527.51.9e-06
PF00098.20zf-CCHCDomain14816230.91.6e-07
PF00098.20zf-CCHCDomain17719232.74.5e-08
PF00098.20zf-CCHCDomain20622130.62e-07
PF00098.20zf-CCHCDomain23625228.78.4e-07

Gene Ontology
AccessionOntologyName
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09250CNBP; cellular nucleic acid-binding proteinEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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