Detail information of Asa2G06514


Location
GeneChrStartEndStrand
Asa2G06514chr217674247601767478463+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020242367.10.0e+00CHD3-type chromatin-remodeling factor PICKLE
SwissprotQ9S775.10.0e+00Protein GYMNOS
trEMBLA0A8K0HU290.0e+00CHD3-type chromatin-remodeling factor PICKLE

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G25170.156.050.01477CHD3;CHR6;CKH2;EPP1;GYM;PKL;SSL2chromatin remodeling factor CHD3 (PICKLE)

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Ortholog group
SpeciesGenes
Allium cepag511430.t1; g76527.t1
Allium fistulosumAfisC3G07874; AfisC4G07232
Allium sativumAsa2G06514.1; Asa5G06022.1
Arabidopsis thalianaAT2G25170.1
Oryza sativaLOC_Os06g08480.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain38843133.82.1e-08
PF00385.21ChromoDomain44749544.96.9e-12
PF00385.21ChromoDomain52657353.51.5e-14
PF00176.20SNF2_NFamily640914216.15e-64
PF00271.28Helicase_CFamily940105365.16e-18
PF06465.10DUF1087Domain1177123165.33.4e-18
PF06461.8DUF1086Domain12581389155.47.2e-46

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0004386Fhelicase activity
GO:0005524FATP binding
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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