result

Gene information

Detail information of Asa3G00317

Location

Gene	Chr	Start	End	Strand
Asa3G00317	chr3	100412857	100413924	-

Sequences

CDS

>Asa3G00317.1
ATGTTTGCCCATCTCCGCAGTAGAATTTTTGCTAGAAATCCATTTTCGTGCCTAATAATCAGGGATGCTCTTGGGCAATTTCAATCGAAATATTCGTCAGTTTCGCAAACTTGTGAAAATCGAATCAGAAAAGCTCCGTCTTCGACAAGAGCAAAATATACAATCGCTTTACTTACCGAACTTCTCAAATCATATGAATTCACAGATCCCCAAATCGCAAAATTCTGCACAAATTTCCCGATTAAGCCCTCGTCTGATCCGATAAAGGGTATAAAACCTAAGTTGGATTTCTTGCTTGAAACTGGGTTTTCGCATACTCAACTCGGAAAGTTCTTCTCTTCGAATCACTTTTTGATGAGAATAAGCTTAGAAGACCGGATAAAACCAAACGTTCTTTTACTCAAAAACTTCTACGGAACCAAGGAACTTTTAATTCGTGCTCTTTTTACCAGCTCGAAGTTATTGCAAGGCAACTTAGAAACCAATTTCTTCCCCAATTTGAGAACATTGACAGATCACGGAGTTCCTTGTACCAAAATCGTAAAGTTCGCCAGCAAACATCCAAGAGGGCTAACGTTTCCTGCAAAAAAGTTTAAGAAGATGGCTGAGTTAGCCGCTTCCAAGGGATTTAACACATGCTCCACCTTATTTTGTACCGCTATTCATTTACTTGTAGGGACAAATCCTGCTACATGGAAGAGAAAAATAAGTTTGTACAGGAATCTAGGATGGTCTGAGGAAGACACTGTCTCTGCATTCTCTAAATGTCCATGGTGCATGGCTGCGTCGGAGAAAAAGATTAAGCAGATAATGGAGTTTTTTGTTAATGAGAGGAAGTGTGAGCCATCTTATTTGGCATTTCATCCTGTGCTTTTTAACCTTAGTTTGGAGAAGAGGATCAAACCGAGGTGTCATGTTATCGATATACTGGTGAACAAGCAATTGGTTAAGAAGAGCCATGCATTTCAGTATTTGATGATCAGTAATAAAGATTTCTTGGAGAAGTATGTGGTGCCTTATCAGGACCTAGCACCGGAGATACTTCATGCATTCAATGGAAAACCCTAG

Protein

Gene

>Asa3G00317.1
ATGTTTGCCCATCTCCGCAGTAGAATTTTTGCTAGAAATCCATTTTCGTGCCTAATAATCAGGGATGCTCTTGGGCAATTTCAATCGAAATATTCGTCAGTTTCGCAAACTTGTGAAAATCGAATCAGAAAAGCTCCGTCTTCGACAAGAGCAAAATATACAATCGCTTTACTTACCGAACTTCTCAAATCATATGAATTCACAGATCCCCAAATCGCAAAATTCTGCACAAATTTCCCGATTAAGCCCTCGTCTGATCCGATAAAGGGTATAAAACCTAAGTTGGATTTCTTGCTTGAAACTGGGTTTTCGCATACTCAACTCGGAAAGTTCTTCTCTTCGAATCACTTTTTGATGAGAATAAGCTTAGAAGACCGGATAAAACCAAACGTTCTTTTACTCAAAAACTTCTACGGAACCAAGGAACTTTTAATTCGTGCTCTTTTTACCAGCTCGAAGTTATTGCAAGGCAACTTAGAAACCAATTTCTTCCCCAATTTGAGAACATTGACAGATCACGGAGTTCCTTGTACCAAAATCGTAAAGTTCGCCAGCAAACATCCAAGAGGGCTAACGTTTCCTGCAAAAAAGTTTAAGAAGATGGCTGAGTTAGCCGCTTCCAAGGGATTTAACACATGCTCCACCTTATTTTGTACCGCTATTCATTTACTTGTAGGGACAAATCCTGCTacatggaagagaaaaataagttTGTACAGGAATCTAGGATGGTCTGAGGAAGACACTGTCTCTGCATTCTCTAAATGTCCATGGTGCATGGCTGCGTCGGAGAAAAAGATTAAGCAGATAATGGAGTTTTTTGTTAATGAGAGGAAGTGTGAGCCATCTTATTTGGCATTTCATCCTGTGCTTTTTAACCTTAGTTTGGAGAAGAGGATCAAACCGAGGTGTCATGTTATCGATATACTGGTGAACAAGCAATTGGTTAAGAAGAGCCATGCATTTCAGTATTTGATGATCAGTAATAAAGATTTCTTGGAGAAGTATGTGGTGCCTTATCAGGACCTAGCACCGGAGATACTTCATGCATTCAatggaaaaccctag

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019701790.1	5.3e-64	transcription termination factor MTERF2, chloroplastic isoform X1
trEMBL	A0A6I9Q933	3.8e-64	transcription termination factor MTERF2, chloroplastic isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G07900.1	33.78	1e-41	167		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G00317	AT5G07900.1	296	192	4	61	353	107	401	33.78	1e-41	167
Asa3G00317	AT1G21150.1	316	217	2	40	353	77	388	29.43	2e-31	133
Asa3G00317	AT5G64950.1	302	206	3	58	351	74	375	29.14	2e-27	120

Ortholog group

Species	Genes
Allium cepa	g255368.t1; g255369.t1; g261762.t1; g358883.t1; g408198.t1; g441642.t1; g453006.t1; g553.t1; g564.t1; g566.t1
Allium fistulosum	AfisC1G06873; AfisC2G04306; AfisC2G04457; AfisC2G07851; AfisC2G07868; AfisC3G07893; AfisC3G08869; AfisC3G08870; AfisC6G03456; AfisC8G05715; AfisC8G05717; AfisC8G05719; AfisC8G05720
Allium sativum	Asa0G02745.1; Asa0G03817.1; Asa0G03818.1; Asa1G00188.1; Asa1G00199.1; Asa1G00205.1; Asa1G00211.1; Asa1G00214.1; Asa1G00216.1; Asa1G00217.1; Asa1G02536.1; Asa1G02539.1; Asa2G07344.1; Asa2G07345.1; Asa2G07346.1; Asa2G07356.1; Asa2G07358.1; Asa2G07360.1; Asa2G07362.1; Asa3G00317.1; Asa3G00319.1; Asa3G00320.1; Asa3G00321.1; Asa6G00019.1; Asa6G00089.1; Asa6G02068.1; Asa6G02079.1; Asa6G02083.1; Asa6G02691.1; Asa7G01244.1; Asa8G03524.1
Arabidopsis thaliana	AT1G21150.1; AT5G07900.1; AT5G64950.1
Oryza sativa	LOC_Os07g24090.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	115	332	85.0	4.2e-24

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network