result

Gene information

Detail information of Asa3G01183

Location

Gene	Chr	Start	End	Strand
Asa3G01183	chr3	313773799	313776199	-

Sequences

CDS

>Asa3G01183.1
ATGTGTGAATACAGAATCTCTTTACAGGCACAACAACAATCGGCACTGAGAAGCAACGGCAATCAACTTCTTCTCTTCGGCAAACCAACTTATAATGTGAAAGATTCATCAATGGCAACGAACAAATCAACGGCAGAAAAATGTTTAGATTCTCAGCTTTGGCACGCATGTGCAGGAGGTATGGTTCAAATGCCCTCCTGTAATTCGAAGGTATACTACTTCCCTCAAGGCCATGCAGAGCACTCCCAGTGTCCTGTTGATTTCGGAGCTCCAAGAATTCCCTCCATCCTCTGCCGTGTTGTCTCAGTCAAATTCTTAGCAGATCCAGAAACAGACGAAGTCTATGCCAAGATCCTACTCTTACCAGAAGCAGAATTTGGTGAAGAAGATCACAATGATATAGGATTGGAGTTGCAAGAAAAGCCAGCATCATTTGCAAAGACTTTGACGCAGTCAGATGCTAACAATGGTGGGGGGTTTTCTGTGCCAAGGTACTGCGCAGAGACAATATTTCCCAAACTGGACTACGCAGCAGATCCTCCTGTTCAGACTGTGCTGGCGAAAGATGTGCATGGAGAGGTATGGAAGTTTAGGCATATTTACAGGGGTACCCCTAGAAGGCACTTGCTGACTACTGGCTGGAGCACTTTTGTTAATCAGAAGAAGCTCGTGGCTGGGGATTCGATTGTCTTTTTACGTGCTGAGAATGGAGATTTGTGTGTAGGGATAAGGAGGGCGAAACGAGGAATTGGATGTGGACCGGAGCAACCTTCAGGGTGGAACCCGCCACCTACTTATGGAAGAGGGTTATCTGTGTTTTTGAGAGAAGCGGAGAACAGTAATAGTAGAAATAGGGGTAGCAGTGGAAATATGAAAGGGAAGAGTAAGGTAAGGAGTGAGTCGGTGATTGAGGCAGCCAGACTTGCTGCCAATGGTCAGGCTTTTGAGGTGGTGTACTATCCTAGGGCAAGCACGCCTGAATTTTGTGTTAAGGCTGGTGCGGTTAGAGGGGCTATGAGGGTTCAGTGGTGCGCGGGTATGAGGTTTAAGATGGCTTTTGAAACGGAGGATTCTTCGAGGATTAGCTGGTTTATGGGTACTGTTTCTTCTGTTAGTGCTGCTGATCCTGTTCATTGGCCTAATTCTCCTTGGAGACTTCTTCAGGTGACATGGGATGAGCCTGACCTGCTTCAAAACGTCAAGCGTGTTAGTCCATGGCTAGTAGAACTAGTTTCCAACATGCCAACTATACATTTATCTCCATTCTCTCCACCACCACCGAGGAAGAAGCTGCGTTTTCCACCCAACTCTGAATTCACTCAAGATACCCACCAATTCTCACCGTTACCACCCACCTTCACTACAAACCCCCATGGGCCCTACGTGGGCATACAGGGAGCCAGGCATGCTCATTACAGTGGTGTTGGTGGTGGCAGCAGCAGCAGCAGCAGCAACAACAATACTGTTTTCTCTCTTCCGGATCTCCATTTTAAGAAACTTCAATCTGGGTTTCTTCATGCAAGGCTTGAACCTAAGCCAAAGCTCGTAGAAGACGATAACATATCTTGCTTGTTAAGCATAGGAAGCCCAGCTACATGTGTTCGGGTGAAAAAAACGACTCCGCTGGTTCTTTTTGGGCAGCCAATACTGACTGAGGAGCAGATATCTCTTAGCAGTGGTTCAAGGAACAGTTCTTCTGAATCCATGGCTTCCAAGGTAGAGGCTGGACACTGTAAGGTGTTTAAAGAACCTGATGATGTTGGCGTCACGATTGATCTTTCAGCGCTTGAATCTTATGATGAGTTATATGGCAAGTTAGCAGACATGTTCGGAGTTGCGAAGCGGGAGATCATTGATCGTTTCTGCTACCGTGATGCCCATGGTTTAGTTAAACATGCGTCGGATGCACCCTTCAGCGAGTTCATCAAAACAGCAAGGAGTTTGACTATACTCATGGAGTAG

Protein

Gene

>Asa3G01183.1
ATGTGTGAATACAGAATCTCTTTACAGGCACAACAACAATCGGCACTGAGAAGCAACGGCAATCAACTTCTTCTCTTCGGCAAACCAACTTATAATGTGAAAGATTCATCAATGGCAACGAACAAATCAACGGCAGAAAAATGTTTAGATTCTCAGCTTTGGCACGCATGTGCAGGAGGTATGGTTCAAATGCCCTCCTGTAATTCGAAGGTATACTACTTCCCTCAAGGCCATGCAGAGCACTCCCAGTGTCCTGTTGATTTCGGAGCTCCAAGAATTCCCTCCATCCTCTGCCGTGTTGTCTCAGTCAAATTCTTAGCAGATCCAGAAACAGACGAAGTCTATGCCAAGATCCTACTCTTACCAGAAGCAGAATTTGGTGAAGAAGATCACAATGATATAGGATTGGAGTTGCAAGAAAAGCCAGCATCATTTGCAAAGACTTTGACGCAGTCAGATGCTAACAATGGTGGGGGGTTTTCTGTGCCAAGGTACTGCGCAGAGACAATATTTCCCAAACTGGACTACGCAGCAGATCCTCCTGTTCAGACTGTGCTGGCGAAAGATGTGCATGGAGAGGTATGGAAGTTTAGGCATATTTACAGGGGTACCCCTAGAAGGCACTTGCTGACTACTGGCTGGAGCACTTTTGTTAATCAGAAGAAGCTCGTGGCTGGGGATTCGATTGTCTTTTTACGTGCTGAGAATGGAGATTTGTGTGTAGGGATAAGGAGGGCGAAACGAGGAATTGGATGTGGACCGGAGCAACCTTCAGGGTGGAACCCGCCACCTACTTATGGAAGAGGGTTATCTGTGTTTTTGAGAGAAGCGGAGAACAGTAATAGTAGAAATAGGGGTAGCAGTGGAAATATGAAAGGGAAGAGTAAGGTAAGGAGTGAGTCGGTGATTGAGGCAGCCAGACTTGCTGCCAATGGTCAGGCTTTTGAGGTGGTGTACTATCCTAGGGCAAGCACGCCTGAATTTTGTGTTAAGGCTGGTGCGGTTAGAGGGGCTATGAGGGTTCAGTGGTGCGCGGGTATGAGGTTTAAGATGGCTTTTGAAACGGAGGATTCTTCGAGGATTAGCTGGTTTATGGGTACTGTTTCTTCTGTTAGTGCTGCTGATCCTGTTCATTGGCCTAATTCTCCTTGGAGACTTCTTCAGGTAGTTTTAATTGGAGCCTACTTAACGACTATTCATTTTAACTTTACTGAATGAAATCTGGTGTATTAAATTTGAATAGTTTTGAGTGAATAGTGAAAGGTAGAAGTGTTTGAATTTGCTGGTTTCTGTTCACCTATTTATTTGATACGTCAagacaaaaaatgtaaattttctatgaacattaactTGTAAGCTACTTCTGCTACTTATAAGTTGTTATCAAACACTGTTTTAGTTGTTCAGGCGGCTTAAGTTATTTCCAGTTATTCAAAGAATTTCACATTCAGTAGAATTATTTACCGAGCAAAGAGACATACTATTAGATTTCCGCAATGTACAAAGTAATTAAGATTTTTGATTTGTAGGTGACATGGGATGAGCCTGACCTGCTTCAAAACGTCAAGCGTGTTAGTCCATGGCTAGTAGAACTAGTTTCCAACATGCCAACTATACATTTATCTCCATTCTCTCCACCACCACCGAGGAAGAAGCTGCGTTTTCCACCCAACTCTGAATTCACTCAAGATACCCACCAATTCTCACCGTTACCACCCACCTTCACTACAAACCCCCATGGGCCCTACGTGGGCATACAGGGAGCCAGGCATGCTCATTACAGTGGTGTTGGTGGtggcagcagcagcagcagcagcaacaacaatacTGTTTTCTCTCTTCCGGATCTCCATTTTAAGAAACTTCAATCTGGGTTTCTTCATGCAAGGCTTGAACCTAAGCCAAAGCTCGTAGAAGACGATAACATATCTTGCTTGTTAAGCATAGGAAGCCCAGCTACATGTGTTCGGGTGAAAAAAACGACTCCGCTGGTTCTTTTTGGGCAGCCAATACTGACTGAGGAGCAGATATCTCTTAGCAGTGGTTCAAGGAACAGTTCTTCTGAATCCATGGCTTCCAAGGTAGAGGCTGGACACTGTAAGGTGTTTAAAGAACCTGATGATGTTGGCGTCACGATTGATCTTTCAGCGCTTGAATCTTATGATGAGTTATATGGCAAGTTAGCAGACATGTTCGGAGTTGCGAAGCGGGAGATCATTGATCGTTTCTGCTACCGTGATGCCCATGGTTTAGTTAAACATGCGTCGGATGCACCCTTCAGGCAAGTTTTACTTATCATTTATAGGTTTGTACAAGGACCTTTTTATATTgactttaatcttgaatttgtttcAGCGAGTTCATCAAAACAGCAAGGAGTTTGACTATACTCATGGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259737.1	1.8e-238	auxin response factor 18-like isoform X1
Swissprot	Q9AV47.1	7.0e-200	Auxin response factor 22
trEMBL	A0A5P1EYY5	1.3e-238	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28350.1	56.80	0.0	672	ARF10	auxin response factor 10

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G01183	AT2G28350.1	669	215	15	46	653	4	659	56.80	0.0	672
Asa3G01183	AT4G30080.1	680	215	18	38	653	5	662	55.74	0.0	670
Asa3G01183	AT1G77850.1	549	272	17	39	554	6	536	41.17	2e-100	363

Ortholog group

Species	Genes
Allium cepa	g192625.t1; g448434.t1
Allium fistulosum	AfisC1G08708; AfisC7G04848
Allium sativum	Asa3G01183.1; Asa7G06995.1
Arabidopsis thaliana	AT2G28350.1; AT4G30080.1
Oryza sativa	LOC_Os02g41800.1; LOC_Os02g41800.2; LOC_Os04g43910.1; LOC_Os06g47150.1; LOC_Os06g47150.2; LOC_Os06g47150.3; LOC_Os06g47150.4; LOC_Os10g33940.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	145	246	76.8	8.8e-22
PF06507.10	Auxin_resp	Family	305	388	113.8	3e-33

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0009725	P	response to hormone

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network