result

Gene information

Detail information of Asa3G01472

Location

Gene	Chr	Start	End	Strand
Asa3G01472	chr3	392651981	392654412	-

Sequences

CDS

Protein

Gene

>Asa3G01472.1
ATGTGTGAAATTAACGAAGCTTTAATTCCCTTGTCTGATACGGATCTGGGAAGAGTATCGGACCCGACTGATGCTCATAAGGTGAGGTTCCTCAGAAGATTCTATTTTTCTCTGCCCTTTTTTCCAGTTGTTTCAATTAACAGTCtcttatatttaatttgaaatttcttttctatCGATGATGTTATGttaaatctagttatttgatagagaAAGCCATGTATATGCTTATTTGGATAGTGGTTTGTTCCATTTGATATGTGATAATCacgtgaaaaaaaaatgaaaatgaacctGGATTGATAagtttgatatttaattttgattgaaaacCAGGTGGCCGTATaaaattcttttttcttctttttttttttctaaaatcttcaaCTTGCCTATGTTTTGTGTCATTGTGTGAGGGCAAAGCGAGCTAGATTGTTATCTTTTGTCAAAATGAACCTTTTGGCTGATTTTTAGTGCATCAAATCCTATACTAGCTTATAAGTATGagtaaaatgataataaatcataaattatgtaTACAAAGGTTTATGCTATCCATCTAGAAGATTGAGTCCATTCATCTATTGAATCCATGATAAACTGTTGCATTTTCATGGTTTCATAACATTTTAGTCACTGATTTCTGTTTAACTATATCAATTCATCATGTTTTTTTATAAAGAGTAGCTCATTTTAATGGATTTGATAACAAAAGGCTTAAGCAAACAGGCATTGGTTAagcaaattattttcaataaacaaaGTGTAACATACAAATCTGTCATCACTTATAAGCCACTTTAGAAAGCATACTATTTTATTTCTTGAGATTTTATTGTGACAACTAAAACACCAATGCAAATTCTTGCAAGTCATCTACATGGTAGCTGGTCTTTACAGCTTTCCATTGGAAAGTATGCTTAAGTATTAGCGGTAAGTTGCCAGTGGTGCTGATCAACACAAGATAAAACCGTTTGAAAGAAGCCAGGAAATCGGACAGAGGGGGtccagaaaaaaaatatataccagTTTACCCTTAATTTCAAGatataatgttttatattatcAGCAAAAATGCTTTAAAAGTGGTCATTTTTCCTTAAAtcggtttaatttttttttttttggttatttgttAAAATCTAGGGGGGCACCGCccccgcttccccccccccccccccccccccagtccccTCTAGCTACGTCCCTGATAAAACGTACACCCCTGCGTTTGTATCTTGCATAATAATCAGGCCAGCAAAATATTTTAACTGGTTACAAAAAATATTGTCGACGACCAGGCTTGTTTCCCCAATTGCTTACACTTAGCTAGTTTCCTTGTCATTGTGGTTCCGGAGATGGACTTGCATATTAATTTCTATTGGCTTCCTTGCTTATAACAACTAAATATGGTCAGTTAATTTGAGTTGGAAAGTGCTTCAGCATGCAATGTCACATATATGATTGCTTACAAAGATAAAAGAAAGATATACATCTAAAACAACAAATAGACCCATATCTCTCTACTGTTTATTTGTTCCACATGTCTATCTAAAACAACTTTGCATACCATCTGATTTTCATCAATATGTTTATAGGACAATCTACATGCACAAACCAAATTTCAGAAGGCACTAGTCTCCAATTCTTCCAATGTGAACAACGCAAGCAACAATGAAGAATCGTCTACAGATCACAGCAACAGGCATGACCATAAACCAAATGAAATCCTTCCATGCCCTCGCTGCAAAAGTAAAAACACCAAGTTTTGCTACTTCAACAACCAAAACATCAACCAACCTCGACACTTCTGCAAAAACTGTCAAAGGTACTGGACTTCAGGCGGGTCAATGAGAAATGTACTCGTTGGCTCAGGCAAACGAAAATCAAAGAACTCAGTCAATCATATGTCCATCGAACAAAATAACAAAAAGCCCTTCAATCCTGTTTTAACTGCACCTACTCATGAAATTATTGACACTCCTGGCTGTAGCGTCGAGCCCCATAGTCATGACCCAGAAGCTTGTTTTTCTACTCAAGGCTACCCGGGCCTTCCTTGGGCTTACTCATGGGCCCCTCCTATGATGATAGCACCACCAGCAAATGtcccttttcaaaattttccaatgtttCCAGTGTTTCCTGATATGTCGAATTTGGTGAATCATTGTGAGGGAAGGAAGCAAGAAGAGAAGAAAACTATTTGGGCTCCTAAAACCTTGAGAGTCGATAATCCTGAAGAGGCAGCGAAGAGCTCTATATGGTCTGCACTGGGAATAAAGAGAGATGAGTCCGTCAAAAGAGACCGGTTATTCAGAGGTTTTCAGCCTAGCGATGAAAGCAATGGTTATAGCGCATCAAATGCTGGTAAGATTTCGCATTTGAACCCTGCCGCCATGGCTAGAAGTCAGCTATTTCAGGAGAGGGCGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	ATG31850.1	1.5e-83	cycling dof factor 3, partial
Swissprot	Q8W1E3.2	1.1e-33	Dof zinc finger protein DOF5.5
trEMBL	A0A291FGD0	1.1e-83	Cycling dof factor 3 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62430.1	35.07	1e-36	150	CDF1	cycling DOF factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G01472	AT5G62430.1	288	129	11	52	303	32	297	35.07	1e-36	150
Asa3G01472	AT1G69570.1	276	131	10	67	302	127	395	35.51	7e-34	141
Asa3G01472	AT1G26790.1	297	153	11	45	302	113	394	30.30	8e-27	117

Ortholog group

Species	Genes
Allium cepa	g189953.t1; g40934.t1; g463157.t1
Allium fistulosum	AfisC2G05921; AfisC6G04768; AfisC7G01978
Allium sativum	Asa0G00536.1; Asa0G04982.1; Asa3G01472.1; Asa3G03350.1
Arabidopsis thaliana	AT3G47500.1; AT5G62430.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	71	126	100.9	2.7e-29

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16222	CDF1; Dof zinc finger protein DOF5.5	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network