Detail information of Asa3G01729


Location
GeneChrStartEndStrand
Asa3G01729chr3460874447460891597-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020103283.11.6e-271NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK8.22.4e-232Protein EARLY BIRD
trEMBLA0A6P5GBM21.1e-271NF-X1-type zinc finger protein NFXL2 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G05660.155.190.0 920ATNFXL2;EBI;NFXL2sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag500514.t1
Allium fistulosumAfisC2G06648
Allium sativumAsa3G01729.1
Arabidopsis thalianaAT5G05660.1
Oryza sativaLOC_Os01g06550.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01422.14zf-NF-X1Family17218919.70.00057
PF01422.14zf-NF-X1Family22424228.31.2e-06
PF01422.14zf-NF-X1Family27729420.00.00047
PF01422.14zf-NF-X1Family33135019.40.00074
PF01422.14zf-NF-X1Family38440218.10.0019
PF01422.14zf-NF-X1Family40542916.30.0066
PF01422.14zf-NF-X1Family4784888.02.7
PF01422.14zf-NF-X1Family4975065.714
PF01422.14zf-NF-X1Family57959010.70.39
PF01422.14zf-NF-X1Family6276448.32.1
PF01422.14zf-NF-X1Family6927043.284

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15683NFXL1, OZFP; NF-X1-type zinc finger protein NFXL1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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