result

Gene information

Detail information of Asa3G02017

Location

Gene	Chr	Start	End	Strand
Asa3G02017	chr3	544762772	544764454	-

Sequences

CDS

Protein

Gene

>Asa3G02017.1
ATGGCCGGACCTGCGAAATCAATCCAACCAAAACCAAGACAGAGAGTCGAAGCCGATACCAGTAGCACCACTACTTTGAAAAGAGCACAAGACGGCAGCGCTTTCACCAGATGGTAAAAGAACGTTCTCTTATCTGTATCTATGCCAGATCTAGATCTCACAACCTTAAACTCTAGTTCCTCGTTTCTAAATATCTGTCTCCTACTTGATGAGAGCGATTTTGTTTGTGTTGCATCAGTTTGTTTTTGATCTGTCGGAGTTTTGGGTAATTCGTTGTAGAATATAGTTGGATTATATTCTCTTTTACATTGGTTAAACTGGTAGTCtataatttggaatttttattCCAGTATATGCTCAGTCATCACTTCAAATTAATCCATTTTCTTTAAGTTTATGGCAAATTGCAAAAATAACGGGCCCCTTGTTCTCATGGATATGCATAACTGCAACTTAGACTCAAATTTGGAAGATCTAAGTATTTATTTGCttaaactctctttatacatttataaacaGTTTGGTGAGAGTAATCTTGTTTGTGTTACTGCATCAGTATGTTTTTTTTATCATTCTGATTTTTAGTTCATTTGCTGTAGAATTTTGTACTTTATATTTGGAttgtattttctttttacattaaatcaACTGGCAGTTTACTTACTTTgggatttttattcctttaaatacGTAGTCATCACTTTAGATTAAATTAGTTCCTTTTCAATTATTTTGATTTCAGTGGAAACTGCAACAAGAATGTTCCTGTTGTGCTCATAGATATGCATAACTGTAGCCTTGACTCTAAAATCAGGATGAATCTAGGTAATTCTTACTCTGACATTCTCTATTTTTACTTCTATTATCTTGATTTTATTGTGTAATCTATTTGTATTTTCAGAGGCTCAAGTTGTAGAAAAAGAGGTCCATATATGGAAACCTGAAAAGTAATTTTCCATCCTCCATGGCTAAATAGTATGCAGTTATTCATTAAATTTGTGCTAAAATTTGAACTAATGCAGAAAGAGACAATCACCAGCTACAACCAAAGAAAAAAAGGGTAAGAAAGCGAAGCAATCTGATCCAAACAAGCCTAAGAGACCTCTCTCTGCATATTTCCTTTTCATGTAATCATCAAATTTCTTTCTTCTActtctatgttgttatttccaaCATTGCTTCTTTATTCTAAAGCTAAACTTGTAAACTCATACTTCAGGGAGGAATTTAGAAAGACATACAAGGAGGAAAACCCAGATTCAAAGGGTGTAACAGGTGTTACAAAGGAAGCTGGTGCGAAATGGAAGTCAATGACAGATGAGGTCTGCATCATTTTTCATGTACAGTGGGTTATGTTATATTATTACAATTTAATCTTCATTTTGTTACCTGTGAATTAACAGGAGAAGAAGGTTTACAATGATAGAGCAGCAAAGCTCAAAGAAGAGTACGCGATAGCGCTTGAGAAGTACAATGCTGGTGGAATTGAAGAGGTGGGTAAATCTTTTAATGCTGCAATTAGTACTTTGATTGTATGTTTGATGATTTAATGTTTGGTGTGTGTTTTAGGAAAAGGAAACTTCTGACAAAGAAGCTGAGGAAAAAGAGGAAGCAAACGAAGGTGCTGAAGAAGAAGCTTGTGAtaaggttgatgaagaacttgaaGACAAGGACGATGATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_006448478.1	4.4e-37	high mobility group B protein 7
Swissprot	Q8LDF9.1	2.6e-26	Protein NUCLEAR FUSION DEFECTIVE 7
trEMBL	A0A067GEA8	3.2e-37	HMG box domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G23420.1	52.78	6e-42	167	HMGB6	high-mobility group box 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G02017	AT5G23420.1	180	74	4	1	170	1	179	52.78	6e-42	167
Asa3G02017	AT5G23420.2	76	22	2	1	73	1	76	67.11	5e-22	100
Asa3G02017	AT2G17560.2	121	57	3	88	205	19	136	47.93	4e-20	94.7

Ortholog group

Species	Genes
Allium cepa	g287468.t1
Allium fistulosum	AfisC7G03801
Allium sativum	Asa3G02017.1; Asa6G00065.1
Arabidopsis thaliana	AT5G23420.1; AT5G23420.2
Oryza sativa	LOC_Os08g01100.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	105	174	73.9	9.1e-21

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10802	HMGB1; high mobility group protein B1	EC:-	Base excision repair	ko03410
			Autophagy - animal	ko04140
			Necroptosis	ko04217

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network