result

Gene information

Detail information of Asa3G02473

Location

Gene	Chr	Start	End	Strand
Asa3G02473	chr3	677439710	677442240	+

Sequences

CDS

Protein

Gene

>Asa3G02473.1
ATGGCTGGTAGAAGAGTTTTTAGTGGTTCAGATGCAAATGTTTTGCAGCAGAACGAGGATGATTCTGTTGGAAATTTTGAGGCTTTGCTTTCTTCAAATTCTTGTAGAGCTGGATTTAGTGGTAATTATCTTATTATTTACGTATTTTACCATTTGATACAAGAATACACGTATATTTTCGTCTTTTTCATGTGAAGATTTAATATCATTAGCGGTTAAGTAAGTAGTTTTTTCTAATTTGGCTACTATTTTTTTGGCTGTTACATAAGTGGTGGTCCTTAGAATATTATTTGGGTATCAAAAAATTGTGTTTCTTGTTTAATTCTGGCAAGGGTGTGCTGATAAGTAGGACTCAACGAATTGAGAAATATTTGATCTTATCTTTAGTGGATGAATTGAAGTATGCCTACCATCATACTTATGTAAatttgtaattacacttatgaACCATGATGgcatatccatgatttttatttaatttttaaataaaaaataaagcttGTACATGTAAATTTACAAGCACTATTGCTATCCATCTCACAATATCCACCAAAGACTACTCAAAAATTTCAACTTTcgactaccccccccccccccccccccccccctctttttttttACAATCTCCATTTGAGTTGGTTGCAACTGGTTGATCGCAGTGGATGATTGTCGGTAACATGTTGTTGGTTGGAATTAAAACAAATTGGGTTAACATAAGTATAGAACGCTGGGTGGGTAGCAAACAATCATTTACAAGTTTCagttctaaaacaaaaataagattataCTTGTTTCAAGGACTGTGCATATGtgtttcaaaatttgtttttttactcCAAATACTTGTTTCAGGGACTAAATCGATGCTAAACTTTGAAAAGGTGTATGGTGAGAGTACGGTTAATCAACAATTTTTTATACCAAGGGAAATCGAAGATGCAATTGATGATGATTTAGATGATTCTCTTGGCCAACCAGTGAAAAAAAGAAGGCTATCTATCACTCAAGTTCAGTTTCTTGAAAAAAGTTTTGAGGTAGAAAACAAACTTGAGCCCGAGAGAAAAGTTCAACTGGCAAAGGAAATTGGATTGCAACCAAGGCAAGTTGCTATATGGTTTCAAAATCGTAGGGCAAGATGGAAGACTAAGCAACTTGAGAAGGATTACAATGCACTAAAATCGAGTTATAACGCCTTGAAGGTTAGTTATGAAAACATGCTAAAGGAGAAGGAAATGCTTAAAGAAGAGGTAAACACACACTTCCCTTTATTGTCCTCTTTTAACATGCATCAGTACTCAGTATATTTGTAGTATATTGTTTGCATTGTATCAAAGAAATGTGTTGGATTGAAACCGACTCCTACTGCATGAAGTTACAGTGTTAATTTCATCTTGATGCATCATTAATTAGTTTCATTTCGCTCATTgtcattcaaatatttcttgtacAACCATCagttatttttggaaaaaaatgtatCATTTTCCAAAAATATGTATCATTCTTTGAAGTTGCACCTTTCCATCCTACATGTCATCTACTTGGTTGAAAACTGAAATGAGTTTGCTAAGCACTCATTGATTTAGGCTGAAAACCTCATCAATCAGAGCAACATTTAATCTCACAGTTCATCAGATACTTGATCTATAGCTTATGGCTTGCTTTGAAACTGCACTTGACTAATTTTGTTTATAACATCTTTAACTTGCTCATCCTATCAAAGTACATGAGTATAATtcttaaattacaaaaataaacGTAGACACAATTTCAAAGCCTGTTCGGAGGAAATGGTAAATCAGTGCCCACGTGGTGAACTCTTGCCTGTAAGCATATTTGGCAACTCTTTATAAGTAATAGAAACTATGAGGGCTTACAAATGGCTAATAAGTAGAACATGGAGAAGTAACTATTTGTTATGCTCATGAAGCAACTTCATAAACCTGTTTGACCGCATATTTCTACTTGGAAGTTAAATTACATCCAAATGCTTTCTATATATGAATTACTGTATATAACTGCATAGAAGTTACgaacaattcaaaaatcattttaatggatttcaaaataaacttttgcCAATGTGGTTCTAAATTATTTTGATGGTCATTTTCCAACATGACTACAAATTGGTCTACTTGCTTTGAATCCATGTCATATAACATCACAGTAATCAACAGGTGATCCATCTAACCGACAAGCTACTTCTACAAGAAACAGACATTAACATGGCTGAAGAAAAATCACTTGAATGTAAATCTTTCATAGACACAAAACCCTTTGAAAGTGATACAGTGAAACAAGAAGCTCAGAGCTCAACTATCAGTGCAGTGTCTGAATCCGATAGTCCACACAGCACCAGCAGAGCACGCACGGATTCCTCCATTGCATTTGACGTGGCCCATTCTGGTACGTCATATGTCGATCATAACGAAGAGGTTAAAGAATATCACGAGTTTTTTAAACTCGAAGACCATTCGGGAAATTTTGATTTCCCTGTTGAAGATCACCCTTTTTGGCTGTGGCCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250149.1	7.4e-72	homeobox-leucine zipper protein HAT5-like
Swissprot	P46668.1	9.5e-24	Homeodomain transcription factor ATHB-6
trEMBL	A0A5P1FVN3	5.3e-72	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G01470.1	39.53	3e-35	145	ATHB-1;ATHB1;HAT5;HB-1;HD-ZIP-1	homeobox 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G02473	AT3G01470.1	253	138	7	40	288	31	272	39.53	3e-35	145
Asa3G02473	AT2G22430.1	102	38	0	79	180	57	158	62.75	2e-32	136
Asa3G02473	AT1G69780.1	227	117	4	72	287	73	287	38.33	1e-31	133

Ortholog group

Species	Genes
Allium cepa	g103561.t1; g121794.t1; g13156.t1; g190300.t1; g199438.t1; g252539.t1; g324522.t1; g361130.t1; g41153.t1; g492566.t1; g55488.t1; g59663.t1; g84342.t1
Allium fistulosum	AfisC1G01481; AfisC1G02424; AfisC1G02864; AfisC1G05033; AfisC1G05156; AfisC2G01313; AfisC2G08452; AfisC3G00906; AfisC3G02637; AfisC4G00626; AfisC4G02622; AfisC4G06244; AfisC5G05451; AfisC6G01716; AfisC6G02991; AfisC6G04767; AfisC6G05728; AfisC7G02966; AfisC7G02969; AfisC7G04763; AfisC8G01572
Allium sativum	Asa2G00783.1; Asa3G02473.1; Asa4G00625.1; Asa7G01405.1
Arabidopsis thaliana	AT1G27045.1; AT2G22430.1; AT3G01470.1; AT4G40060.1; AT5G65310.1; AT5G65310.2
Oryza sativa	LOC_Os08g37580.1; LOC_Os09g21180.1; LOC_Os09g29460.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	85	137	56.2	2e-15
PF02183.15	HALZ	Family	139	180	52.6	3.6e-14

Gene Ontology

Accession	Ontology	Name
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network