result

Gene information

Detail information of Asa3G02698

Location

Gene	Chr	Start	End	Strand
Asa3G02698	chr3	748228172	748230395	+

Sequences

CDS

Protein

Gene

>Asa3G02698.1
ATGGCAGCAATAGCATCCAAGAAATCAAAGAGCAGAAAAGCCCTGAAAGATATCTCCTCTAACGAACTTAATGTCCATGCTGGAAAAATTTCGTCTTCTCTGACAAAATCAGTGGATAACTGTGATTCTAAAATCCTATCCCCGGAAAAGTTCATGAAAAACACTTCGTTAGACATAATAAAAGAGAGGTCTTTGGCGGATGAACTAAAAGAGGTGAAAAGAAAGCTTAAGCATCTTCGTATTGAGAAAGAAAAAACGGAAGAGCTTTTGAAAGAGAGAGACGCGATTATCAAATCCAAGGAGGAAGAGCTTGAAAATAGAGCCAAAGAGCATGAAAAACTTCAAAAGGAAATCAAGAAGCTGCAAAAACTGAAGGAGTTCAATCCCACAATGAATTTACCAGTGGTCAAGTCTTTGAGAGAGAAGGAGCAGGAGAAGAACAAGAAGCTGAAAAAGCCATCTTCTGCTTATATTTTGTGGTCTAAAGATCAGTGGAACGAGGTGAAATGACTTACATTGTTGATTTATTATAGACTATGTAAAAGCTATCCAATGTTCACATGGTTTGTTTCACTGCTGCAGGTAAAGAAAGACAATCCAGATGCTGAGTTTAAAGATATCCCAAATATATTGGGAGCCAAGTGGAAAAATTTAAGCGCTGAAGAAAAGAAACCATACGAGGAGAAATACAATGAAGAGAAGATGATACATTTGCAAATTAATGACAATGAAAAGCGAGAAATGGAAGCACTGAAACTTTTGGAAGAAGAACAAATGCAAAAGACTGCGATCCGGTTATTAGAACAATACATGCAGTTTAAGCAGGTATCAGATTGCTTAGTAGTCATGTACTTATGTTGCAACATTCCCTCTTCTGAACATtttaatgtatgaatttattttgctACAGGAAGCTGACAATGAGGTGGCAAAGAAATCAAAGTAAATTACACTCTTTATTTGTTGTTTTATCACAGTAATTTGAAAATAGTCTCCTTTTCATGCCTTTGTAATTGGTTTGTTTGTGCATTGATGTAGGAAAGAGAAAGATCCTTTGAAACCAAAGAAGCCTATGTCTGCATTTTTGTTGTTTGTGAATAAGCGTAGGCCAGAATTACTTGAAGAAAAAAAGAGTATGGTTGAGGTGATGAAATGTACTTTGACTctttaaaaagaagaaaagttgACAAAATTATTTGACCGTTggagttcaaattttatttgttttattatggaCAGATAGCGAAGATAGCTGGTGAAGAGTGGAAGAATATGACTGATGAAGATAAAGCTCCTTACGAGCAGGTTTCTTACTTGAATCTCTTACTAAATTTGTACATAAAATAAAGCTTGAATAGAGCATCCTTtaatttaccaaatatttcaacaTATGTTAATGGCACTTCAGAATGCAAAGCAGCTGCAGGAAGAATACAGCAACAAAATGGAGGTCTACAACGAAAACAAACTTCAAGTAATGGCCATGTACTTACagtgtttttatatataaatagtagTTTACTGGTTTGCAAAATCAGGCAAGCTTTTGTTCCTAAAACAACAGGAAGCCGCCAATCAAGAGAAGGAAGAGATGGTGCAGGGGAAATATTTGAAACAGGAAGCTCTTCAGTTActtaaaaagaaagagaaagccGAGGGTATCATCAAGGTACTTCTAAAATAGTCCACATTTTTTACTTCATGATGTGAGCAATATAATAAGAAGTATTCTGATATAGAAAACGAAGGAGAACAAGAAGAAACAGAAGGGAGAGAAGAAATTTGATCCTAACAAGCCTAAGAAGCCCCTTACTTCTTATCTCCTTTTCAGGTACAAAACGTAGACTAATTTGTCAAAAAGACTTGTATAATTATTATGAACGTAGTATGAGAATCAAAATAGAAGACATGTAAACTAAATTTCTTTCAATGTGTGTAGCAATGAAATGAGGAAAGCGCTTAAGAAGGAAAAACCAGATATGCAAAATTCTACTCTTAATGCTATAATCTCAGTGAAATGGAAGGTAATATTACCTACACTGTCTTGAGTGCTGTATGTATGCAAAATAGTCATCATTAATTTTCGTTGCAGGAGTTAAATGATGAAGAGAAGAACATGTGGAACGAGAGAGCAAATGAAGCAAAGGAATTATACAGAAAAGAGATGGAAGAGTACAACAAATATGCTGCTTTAAACCATGCAGCTACTGCTTCTGAAGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022931308.1	1.3e-73	high mobility group B protein 6-like
Swissprot	Q9SUP7.1	4.3e-66	WRKY transcription factor 53
trEMBL	A0A835DUV2	4.9e-75	High mobility group B protein 13

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G23800.2	54.63	6e-108	388	3xHMG-box2	HMG (high mobility group) box protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G02698	AT4G23800.2	421	169	5	63	473	42	450	54.63	6e-108	388
Asa3G02698	AT4G23800.1	420	175	4	63	473	42	456	55.00	1e-106	383
Asa3G02698	AT4G11080.1	408	171	2	63	462	41	441	54.41	3e-106	382

Ortholog group

Species	Genes
Allium cepa	g401133.t1
Allium fistulosum	AfisC7G02734
Allium sativum	Asa3G02698.1; Asa3G02701.1; Asa4G01855.1
Arabidopsis thaliana	AT4G11080.1; AT4G23800.1; AT4G23800.2
Oryza sativa	LOC_Os02g15810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	151	212	64.6	7.4e-18
PF00505.16	HMG_box	Domain	267	333	57.6	1.1e-15
PF00505.16	HMG_box	Domain	393	461	70.1	1.4e-19

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09273	UBTF; upstream-binding transcription factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network