result

Gene information

Detail information of Asa3G02916

Location

Gene	Chr	Start	End	Strand
Asa3G02916	chr3	800715572	800717689	-

Sequences

CDS

>Asa3G02916.1
ATGGGAGTATGCTTGAAGAGCATATTTGGTTTGGAAATCGCAATTAACTGTGCTTGCAAAATTTTATGGAAGATTTCGATTTGCGTTGCGTATTCTGGTGATATAAACATTCACCAGTTTTTCACAAGATACGCATGCATTCATTTTGACGATCATGGTTGGCCAGAAATGCTCAAACTTAAGGACTGGCCTTCCGCTACTGCTTTTGAGGATCGTCTGCCAAGGCATGGTGCAGAGTTTATTGCTGCATTACCCTTTCATGAATATACACATCCTCGATTTGGGTTTCTTAATTTAGTGACTAAGTTACCCGCTGATGTTATAAAGCCTGACATGGGTCCAAAATCATACATTGCATATGGATTTCACAAAGAACTAGGCCGAGGAGACTCTGTCACTAAACTTCATTGTGATATGTCTGATGCGGTGAATATCTTGATGCACACCGCAGAAGTAATGCCTTCTTCAGGGCAACTTAGAAAAATAAAACGAAAAAAGAAGCAGCACATGCAGCAAGATGTCAAGGAGAAATGTGGTAATGGAAGTATATATATGAATAATAATTTGATTCAGTTAAATGGCGACAGAACTCAAGAAGGTGAACCAAATAATTATACGGACGAAAAAATGGGTGTGTCTGTTACTAAGTCTGATGTAATTAGTTCTGAGGACCCTAGTATTCAATCTGAAGACCATGGTCAAACAAATAATGTCATTGCAAAGAACGAGAAAAGCAACCTTGCTAGTTCTACGAATTACTCAGGAGGTGCCCTTTGGGACATATTCAGAAAAGAAGACGTCCCAAAGCTTGAAGATTATTTAATGAAACACTGTAGACAGTTCAGACACATATATTGCTGTCCAGTGGAGCAAGTAGCACATCCTGTTCATGACCAATCTTTTTACTTAACTAAGAAACACAAGAGAAAGTTAAAAGAAGAATACGGTATTGAACCTTGGACATTCGAACAAAAGATTGGCGAAGCTGTATTCATCCCAGCAGGTTGCCCGCATCAAGTTAGAAACCTGAAGTCTTGCATAAAGGTTGCTTCAGACTTCGTCTCACCAGAGAGTATTCCGGAATGCATGCGATTGACCAAAGAATTTCGTCTTCTTCCTCCTTATCACAGAGCCAAAGAGGACAAGCTGGAGGTGAAGAAAATTGCTCTGCATGCCCTGATGAGAGCTGTGAATGATGCTGAAGAGTGCATATTAAATGATAAGTAA

Protein

Gene

>Asa3G02916.1
ATGGGAGTATGCTTGAAGAGCATATTTGGTTTGGAAATCGCAATTAACTGTGCTTGCAAAATTTTATGGAAGATTTCGATTTGCGTTGCGTATTCTGTACTAAATTCCACCTTCGTTTTCTTGTTTTCTTGTTTTGTAGGGTGATATAAACATTCACCAGTTTTTCACAAGATACGCATGCATTCATTTTGACGATCATGGTTGGCCAGAAATGCTCAAACTTAAGGACTGGCCTTCCGCTACTGCTTTTGAGGATCGTCTGCCAAGGCATGGTGCAGAGTTTATTGCTGCATTACCCTTTCATGAATATACACATCCTCGATTTGGGTTTCTTAATTTAGTGACTAAGTTACCCGCTGATGTTATAAAGCCTGACATGGGTCCAAAATCATACATTGCATATGGATTTCACAAAGAACTAGGCCGAGGAGACTCTGTCACTAAACTTCATTGTGATATGTCTGATGCGGTATGTTAGATCTTTCACAATTTGTTGAACTGTTGAAAATATTTTGCCTTTTCATGTCTCACTAGGAAGAAATATAGCACAAATTGAAAACACCAAatctatataattataaatcatgttttacttATACTTTCCACTATGTGTAAAACTGTGAAAAACTTAAGCCAAATTggtatttaacaaaaatgatacctgGTGTATAGTTgcattattctatttaataaattgcTGTTACATCTTGCAGGTGAATATCTTGATGCACACCGCAGAAGTAATGCCTTCTTCAGGGCAACTTAGAAAAATAAAACGAAAAAAGAAGCAGCACATGCAGCAAGATGTCAAGGAGAAATGTGGTAATGGaagtatatatatgaataataattTGATTCAGTTAAATGGCGACAGAACTCAAGAAGGTGAACCAAATAATTATACGGACGAAAAAATGGGTGTGTCTGTTACTAAGTCTGATGTAATTAGTTCTGAGGACCCTAGTATTCAATCTGAAGACCATGGTCAAACAAATAATGTCATTGCAAAGAACGAGAAAAGCAACCTTGCTAGTTCTACGAATTACTCAGGAGGTGCCCTTTGGGACATATTCAGAAAAGAAGACGTCCCAAAGCTTGAAGATTATTTAATGAAACACTGTAGACAGTTCAGACACATATATTGCTGTCCAGTGGAGCAAGTATATTCTTTTTGTTTCATTATTTCTTCAGTACTTCAACACTTATTTAATATTTGTGAGAATCatgttaacttttttttttatagGTAGCACATCCTGTTCATGACCAATCTTTTTACTTAACTAAGAAACACAAGAGAAAGTTAAAAGAAGAATACGGTCAGTATTTTCTTGGTCTATAGCAGTTAATTATATGCATTACAGATCACTctccttatttttatatattctaggTATTGAACCTTGGACATTCGAACAAAAGATTGGCGAAGCTGTATTCATCCCAGCAGGTTGCCCGCATCAAGTTAGAAACCTGAAGGTAATGTTAGTATGTGGTTTTGTCAATCGGTatgtttgttaaaatttgttttatgatTTTGCTCTCTCATGAACATCCTTCTTTGGTAGGAATCTTCATATTAAGTGgacgtttgttttgtttgtttacaATTTCCATACTCTGTAGCTTGAAGATGCAATAATGCATGCAAAGTTTTACCTCTTCATAGTTCACACCTTCCTGTGTTATACTGCTCATGTTGATATTTTTCATTTCCGTTCTACTGAAGGAATCAACTGTAATTGTCCATGATGTGTTTTTGGTGGATAAATTTACGCACTTGTCATCAATTAATTTTTCATCCTAAAGCTTTTAGAATCATGTTACAGTCTTGCATAAAGGTTGCTTCAGACTTCGTCTCACCAGAGAGTATTCCGGAATGCATGCGATTGACCAAAGAATTTCGTCTTCTTCCTCCTTATCACAGAGCCAAAGAGGACAAGCTGGAGGTGATTACTCCTATTCTTTATTGCAGTATTTTTTATGTGCAGCAGACCTGTTAATTGTATACTGAACATCtgtaattttatttctatggaGCAGGTGAAGAAAATTGCTCTGCATGCCCTGATGAGAGCTGTGAATGATGCTGAAGAGTGCATATTAAATGATAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247099.1	1.4e-124	lysine-specific demethylase JMJ25-like isoform X1
Swissprot	Q9SSE9.1	3.1e-105	Protein JUMONJI 25
trEMBL	A0A5N5HVT7	2.5e-120	Lysine-specific demethylase JMJ25-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G11950.1	53.23	2e-107	386		Transcription factor jumonji (jmjC) domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G02916	AT1G11950.1	372	119	4	35	406	557	873	53.23	2e-107	386
Asa3G02916	AT1G62310.1	357	112	3	34	390	574	883	55.46	5e-107	384
Asa3G02916	AT3G07610.1	368	117	4	35	399	578	889	52.17	5e-106	381

Ortholog group

Species	Genes
Allium cepa	g255533.t1; g459650.t1; g532603.t1; g86967.t1
Allium fistulosum	AfisC1G04398; AfisC2G07390; AfisC7G02477; AfisC7G03329
Allium sativum	Asa3G02300.1; Asa3G02916.1; Asa3G02918.1; Asa6G05198.1
Arabidopsis thaliana	AT1G11950.1; AT1G62310.1
Oryza sativa	LOC_Os02g01940.1; LOC_Os02g58210.1; LOC_Os02g58210.2; LOC_Os03g31594.1; LOC_Os03g31594.2; LOC_Os09g22040.1; LOC_Os09g22540.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02373.19	JmjC	Domain	243	353	57.9	1.1e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15601	KDM3; [histone H3]-dimethyl-L-lysine9 demethylase	EC:1.14.11.65	Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network