result

Gene information

Detail information of Asa3G02945

Location

Gene	Chr	Start	End	Strand
Asa3G02945	chr3	807481517	807483430	-

Sequences

CDS

Protein

Gene

>Asa3G02945.1
ATGAATCCGACGACGAGTTTTCTCCGTCGGACGCGACTTACTCTTGCGATGAGTTTCGGATGTACTGAGTTCAAAATTAGAAGGTGCGTCCGTGGGAGGAGCCATGACTGGACTGATTGCCCTTTTGCCCATCCGGGTGAGAAGGCCAGGAGGAGAGATCCACGAAAGTATCATTATTCTGGCACCGCTTGTCCAGATTTTCGTAAAGGTATTCTTCAatgttttatttattcttattatgTTTATCAATAGCGACTTTAGTCAGTGTTCGTGGCATGCTTGAGTAGTATCTGTGATTCTGTATATCGATGCTTGTTTTTGTGGGATAGGTAATAAGATATTGTTGAAATAGTTTTTGTGGGTTAGTAATAGATATTGTTGAAATAGTCTAATATGACATTAAGTTGGTAGATGTTAAGCCACCGTCATTTTGGTTGAAACATTAATCCTTTTTATGATGTGAAAAGCAGCAATATGTGTGAGGAAGTGCTTAGTTAATTTGTTCATTTATCGGTTAAAAAAAAGATGGATTAAACCATTTAGATATTTTTTATATTAGGGGCCTATTGGTGTATAGTTTACTAGTTTTAATGGCTGCAAAATCGAGAAATTATGTACGTTTTTCGAAGTTCGAACCGTTGATTGTCATTTGCGTATTAGTATATATTATTAGTATTTCATTGATGTGTTCTAATTGTAGATTAATATTGCTGCTAATTATATCCTTTTAGGCCCATGTATTACTATCTATTGTATTACTTCGTTTGGGATTATCTAAACACAGCtgtattattttaaatagatttgatcAATTTTAATGCTTATAAATATTTCGTTTGTGTATAAAAAGTATTTTCTAAATGTATTCGAAGCCTTGTCCTCAAATACAACTTGCTCTCGTTTGAGATTCCGCTACTGAATATGAACTAAATCACGCTGTCTTTGGATATGTTATTAGGGATTTAATTACTGGTAGTAATAATGTTAAAATTATCGTCATTAATTAATGTTCATAAATGAATAGTAGTTTAATAGGATTTAACATCAAAAGATTTTAACATTTTTGTGTTCATTTTTATCATTACCATGTTAACAACCACTCTCTTAAATTTGATAAGAATTTGGCTTGATTGAAATCCTTATTGGTTTGATGAATTATTATGCTAGTGTATGGAAGGTGTGGTTTCTAAATCAAAGAAATAATTAGATCATACCATGTTAATCTATTATAGTCGTATTAAACATTGTGTttttatcttggttaagttttTCCATATGATACATGGTCCTTGCTGATTTATCATGGAAGGTTATTCCTAGCTTCTATAGTATATGAAATGCTTACATATTCCACTTTATATTACGTTATAATCAGGTAACTGCAAAAGGGGAGATGCATGCGACATGGCACATGGGGTATTCGAGTGCTGGCTGCACCCGGCCCGCTACCGCACCCAGCCATGCAAAGACGGAACAGGCTGCCGCCGCCGCGTCTGCTTCTTTGCCCACACACCCGACCAGCTCCGGGTCCTCACACCTGCAGCCTCAGCCTCCACCGCCATCGATTCCTACGACGGCTCCCCAGCCCGTCGCTCTCCACCTGCATCCCCAAGCTCCCTCCTCGAAAGCCTCCGCAAACTTCACATCGCCCGCAAGTACAACTCCTGCTTCGGGTCCCCCACCAGCGTTGGCGGGTTCTGCAGCCTCCCCTCCACCCCAACCCCCACCCGTGTCGTTAGCGGGTTTGACCTCAACGGGTATGCCGATGACGAATGCTGCACTGATCAGAGGGTTGAGAGCGGCCGGGCTTTGCGGATGAGGATGTACGAACGGCTCAGCAAGGAAAGCTGTGTTCCTGATAAAAACGAGCTTATCGGGCCCGACGTGGGATGGGTTTCCGATCTGCTCATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	RYR19843.1	5.2e-74	hypothetical protein Ahy_B03g064736 isoform E
Swissprot	O82199.1	6.4e-69	Zinc finger CCCH domain-containing protein 20
trEMBL	A0A445A088	3.7e-74	C3H1-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G29190.1	50.35	1e-65	246	AtC3H49;AtOZF2;AtTZF3;OZF2;TZF3	Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G02945	AT4G29190.1	282	83	9	19	248	80	356	50.35	1e-65	246
Asa3G02945	AT2G19810.1	286	85	9	19	248	79	359	48.95	2e-64	242
Asa3G02945	AT2G25900.2	225	98	3	19	229	91	314	49.78	1e-55	213

Ortholog group

Species	Genes
Allium cepa	g127991.t1; g156857.t1; g298224.t1
Allium fistulosum	AfisC6G06191; AfisC7G02453; AfisC8G02051
Allium sativum	Asa3G02945.1; Asa3G02947.1; Asa8G01139.1
Arabidopsis thaliana	AT2G19810.1; AT2G25900.1; AT2G25900.2; AT4G29190.1
Oryza sativa	LOC_Os01g09620.1; LOC_Os01g09620.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0046872	F	metal ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07560	dtd, DTD; D-aminoacyl-tRNA deacylase	EC:3.1.1.96	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network