Detail information of Asa3G03112


Location
GeneChrStartEndStrand
Asa3G03112chr3845408071845411407+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020258162.19.7e-254lysine-specific histone demethylase 1 homolog 1-like
SwissprotQ6Z690.13.4e-219Protein LSD1-LIKE 1
trEMBLA0A8B7C3E13.4e-232lysine-specific histone demethylase 1 homolog 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G62830.162.460.0 771ATLSD1;ATSWP1;LDL1;LSD1;SWP1LSD1-like 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag449603.t1
Allium fistulosumAfisC7G02194
Allium sativumAsa3G03112.1
Arabidopsis thalianaAT1G62830.1
Oryza sativaLOC_Os02g51880.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF04433.14SWIRMDomain18926646.43.4e-12
PF01593.21Amino_oxidaseDomain291723301.11.6e-89

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0055114Poxidation-reduction process
GO:0016491Foxidoreductase activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11450KDM1A, AOF2, LSD1; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylaseEC:1.14.99.66 Thermogenesisko04714

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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