result

Gene information

Detail information of Asa3G03293

Location

Gene	Chr	Start	End	Strand
Asa3G03293	chr3	900380260	900381652	-

Sequences

CDS

Protein

Gene

>Asa3G03293.1
ATGGAAGGAGCAGGAGCAAAGAAAGAGTGTGAGAATTTGCCTCCAGGGTTTCGATTTCACCCAACGGACGAAGAGTTGATTACTTATTACTTGAGTCACAGAATTTCAGAGCCTAATTTTGATGCAAGAGCTGTTGCAGATGTTGATCTCAACAAGTGTGAACCTTGGGATCTTCCTGGTATCATTCTTTTCTCATATTGTCAAACCATTAACTACATATTTCATCTTCAGTTTCTTTTCATTTTTGGTGTATGTTATACTATTATAGGTTACATACCTAGCTTACCAGAATATAAGTATTTGTATTGACTGTCTCTTGTGTTTTGTCTATGAGAATTATTCTTTTCACTAACATTCCGGACGTAAATTCATGATATTGTCTTTCATTGTACCAACCATAAATCTACCTTTTCTATTATCACATGCATATGTTATGGTAATTAAGTCGATCAGCTCATTTAATCATGTTGGTATAGTTAATAGCTCGTGttagcataaaaggagataaaaatGAAGATGTCAATTTGGGCTTATTGCAAACAAATCAATAAATGTTCAGGAAAGGCAAAAATGGGGGAAAAAGAATGGTATTTCTTCAGCCTAAGAGACAGAAAGTACCCAACTGGAGTTCGAACAAACAGAGCAACCACCGCCGGATACTGGAAAACGACCGGCAAAGACAAGGAGATATACAACAGCGAAACTTCAGAGCTGGTCGGAATGAAGAAGACATTGGTTTTCTACAAAGGAAGAGCTCCTAGAGGAGAGAAGAGCAACTGGGTGATGCATGAATACAGGCTCCAATCTAGGCCTACATACAAACCAAACAAGGTATGATCACCAACATGAAAAATAGATTATCCACTTTGGTTCAAAACTAACTAACATTTAGTTTGGCTTATAACTGCTGTATTTTGTGAACTCATTGTAGGATGAGTGGGTGGTATGTAGGGTGTTCATGAAGAGGCCAGGAGCGAAAAAGTACACCACCCAGCCACGAGCAACGAACCAGTACACGATCGACATGTCGAACGCAGCGCTGATGCAGAACGGGCTGATGCATGCAGCGGAACCCTACGGCCACTTTGGTGTAAGTAGATCCCACCACCTGACGCATGCGGATCTGGTTGAGTTGGCAAGGTTCGCGAAAGGGCAGCAGGGATACAACATACCTATTCAGCCACAGCCTAGCTTTCCGACTAACTACGCACTTTCTGGACTGAATCTGAACGTTGGATcgcagcagcagcagcaacaacaacagcaggcGTTGCTTGGAGGGTACAGCGGGGAAATGGGCGGCGGCAATGACAGCGGCAATGTAGGCAATAATGCAGCGAGGTTTCAGAACGTTGAGTGTGTAGACTTGGAGGGGTATTGGCCTACATACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020266731.1	1.5e-107	NAC domain-containing protein 92-like
Swissprot	O04017.1	4.7e-66	NAC domain-containing protein CUC2
trEMBL	A0A804JY37	3.8e-97	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G24430.1	51.10	2e-80	295	ANAC038;ANAC039;NAC038	NAC domain containing protein 38

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G03293	AT2G24430.2	317	125	6	7	303	10	316	51.10	2e-80	295
Asa3G03293	AT2G24430.1	317	125	6	7	303	10	316	51.10	2e-80	295
Asa3G03293	AT3G18400.1	158	32	2	11	167	3	158	77.85	1e-70	263

Ortholog group

Species	Genes
Allium cepa	g15758.t1; g230464.t1; g402158.t1; g422842.t1; g523460.t1; g69493.t1; g73352.t1
Allium fistulosum	AfisC1G08943; AfisC5G02503; AfisC5G02509; AfisC6G04754; AfisC7G01939; AfisC7G02655; AfisC7G04462
Allium sativum	Asa3G01466.1; Asa3G02772.1; Asa3G03293.1; Asa7G07167.1; Asa7G07168.1; Asa7G07182.1; Asa8G02536.1
Arabidopsis thaliana	AT2G24430.1; AT2G24430.2; AT3G15170.1; AT3G18400.1; AT3G29035.1; AT5G07680.1; AT5G07680.2; AT5G18270.1; AT5G39610.1; AT5G61430.1
Oryza sativa	LOC_Os03g42630.1; LOC_Os04g38720.1; LOC_Os06g23650.1; LOC_Os07g48550.1; LOC_Os09g32260.1; LOC_Os09g32260.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	14	140	98.6	2.4e-28

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12581	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8	EC:-	RNA degradation	ko03018

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network