result

Gene information

Detail information of Asa3G04826

Location

Gene	Chr	Start	End	Strand
Asa3G04826	chr3	1332928942	1332930399	+

Sequences

CDS

Protein

Gene

>Asa3G04826.1
ATGATTAGTTCTGCCAAAGACTGGTCAGACTATAATGAATCTCAGTTCAGGAGTAAGGTAAATTTGATAAAAATACTTTGAAGAGAAACAAATCACATATGGAACAAAATTGTACAAACTAAAGAACTCTACTGAATATTTGCTATGGTTTAGATCACAACACTTTCCAGTGTTAACCACAAGAACTTTATGAATCTTATTGGCTATTGTGAGGAAGAAGAGCCTTTTACCAGGATGATGGTTTACGAGTATGCTCCTAATGGAACACTGTTTGAACATTTGCATAGTgagtatattgattatttatactGATTACTAACTATGGCTTTACATATTCCCATGACGTGTTTCCAAAAAAAGGGGGTGGGGGGTTCCATGATATTTAAATATGTTCAGTTAAACTCTCTTTTTCATATGTTGTactgaaaaagaaaatttactgTGCATTTAGGGGGGGACCTTTGGGTAAGTCAAGCAAGTCAATTGTTTGGGACAACCCAAAGAAGTGGTTACAACTTTTCACTTTAATAGAAGTTCAACCCTGGTTAGCTTCATCTTAATTATCTCTCCTTATATTATGTCAAATATAATCAATTTTAACTACAATTAGAAGCACCTTATATGTTGCCCGTCTAATGCTACCCAAATGATAtgattgatcctatctgtatgtaGAATGAAATAACTGGattaaagaaggaaacaaaagtaGTTTTTAAGGTACATGGTAGGATAGGAAACTATGTGATATAGAcgttcatttttctttatttcataaCCTCTTTATCTTATGATCTACAATTTTCTATATAATTCTTTTTCCTAATCTTTGAAAAATTACCAGTTGAAGAAGCAGATCATTTGGACTGGCCTGCTCGCTTGAGAATAATAATGGGAGTAGCATACTGTTTAGACTACATGCACCAACTGGACCCTCCTGTTGTTCTGAATGATTTAACTTCATCTTCCATCTATTTATGTGATGATAATGCTGCCAAAATATCAAACCTTCCATTCACATACGAAGGAAAAGAGGCAAACAATGAATTATCTTTTGAATGCTCAAGAATTTTGGATTCTAAACTATCAACTTTGGAAGGCAATGTGTACAAATTCGGTATCTTATTGTTGGAAATGATTTCGGGTAGGTTACCATATAGCAAAGATGACGGTGTACTCGTGCTTTGGGCTTCGAGTCACTTAATGGGTAAAAGGCCATTAATTGACATGGTTGATACTACCCTCGAGTCATTTGGTGCAGAAGATGTAGCAGCATTGAGTGAGATAATCAAAATGTGTACTCATAGTGATCCCAAGAAAAGACCGAAAATGAAAGAGATTGTTTGTAAGTTGAGAGAAATTACCCATATGCCACCGGTTGCAGCTACTCCTAAGCTATCGGCTTTATGGTGGGCCGAGCTTCAGATCATATCTACAGAGGGTGACAGCTTAGATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252701.1	2.0e-108	inactive receptor-like serine/threonine-protein kinase At2g40270
Swissprot	C0LGU7.1	3.3e-71	Probable LRR receptor-like serine/threonine-protein kinase At5g45840
trEMBL	A0A5P1FFC4	1.5e-108	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G45840.1	49.43	8e-73	270		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G04826	AT5G45840.2	263	131	2	2	263	444	705	49.43	6e-73	270
Asa3G04826	AT5G45840.1	263	131	2	2	263	406	667	49.43	8e-73	270
Asa3G04826	AT2G40270.1	261	122	3	3	261	233	488	50.57	2e-72	268

Ortholog group

Species	Genes
Allium cepa	g127320.t1; g407217.t1
Allium fistulosum	AfisC1G07639; AfisC7G00199
Allium sativum	Asa3G04826.1; Asa7G07389.1; Asa7G07390.1
Arabidopsis thaliana	AT2G40270.1; AT2G40270.2; AT3G56050.1; AT3G56050.2; AT5G58540.1; AT5G58540.2; AT5G58540.3
Oryza sativa	LOC_Os03g18370.1; LOC_Os05g28520.1; LOC_Os05g28520.2; LOC_Os05g39410.3; LOC_Os05g48660.1; LOC_Os05g48660.2; LOC_Os07g49240.1; LOC_Os12g01510.1; LOC_Os12g01510.2; LOC_Os12g01510.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	10	233	74.2	9.1e-21

Gene Ontology

Accession	Ontology	Name
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network