result

Gene information

Detail information of Asa4G00762

Location

Gene	Chr	Start	End	Strand
Asa4G00762	chr4	216373862	216375516	-

Sequences

CDS

Protein

Gene

>Asa4G00762.1
ATGGGATGCAATGGCATGCCATCATCGTTTTTCCCTCCAAAGTTCTTGTACCAGATGCAATTATCTCCTATTGAAGAGAATCATCATTTACTTCCAACAATGCCACAAGACTATAGAggtagatttatatatattttttgatcagAACCACATGTTTCAAAATCAAAAGATGTTCACAAATTTTCTATAGGTGTAGCATCAATACTTGGAAAAAGATCAGGTATGACCTTTGATGATATGGGCGGGGATGACGAGCTTTCAGACGATTCCCAAGCGGCGGAGAAGAAAAGAAGATTGAACTTCGAACAAGTAATAATTATCACAGTGTCTTTTGACACTGTTTCATTAGTATATTGCAAGATTTTCATTATATCTACGCATATATTAATGTGTATACTTACAGGTGAGGACGCTAGAAAAGAATTTTGAGATCGGAAATAAGCTTGATCCGGAAAGAAAGATGCAGCTAGCAAAAGCGTTAGGAATGCAACCAAGGCAAATTGCAATATGGTTTCAAAATAGAAGGGCTAGATGGAAAACAAAAAAACTGGAAAATGATTATGAGGGTTTGAAAAGGCAATTTGATATCGTTAAATCAGAGAATAGTGCGCTTCATGAACACAACAAAAAATTACAGGCTGAGGTAAATACATTACGAACTTTTGGTTTCGTTGATTCGATCTTCTTTCTTTATTCATGCTATCATGTATATCAAATGAATAAGTTTAATGCTCAGATAGTAAAGCTTCACTCTCTACATAATGATTTATTTCTAAGACAATGCAATAATTGATTAAGCGAAAGGAATTGACTATGATTTTCTTTCTTGAATTGAGCATGATTCAACagagaaagataaaataaaataaatctcgaCATTATCCTACAGTTTGTTTTGTCTTCAAGATGAATAGCTGGACTCTGGAATGGAGATCAACGCAACTTTTATTTCACAAGTTTACAGTTTAATCATCACCTtggacaatttttttaaaataactttattCCATTAATAAAAGAGATATCTGAATTCACATTTGCATATTCACTAACTGTTATTGAGCAATGAAGGAAGCAACTTTTATTGTTTTGCTTTCAAGACATAAGTTGGCGAACTATTGAACAGTGAAAAAAAGAACATCATAGTTGAAGGGTTTAAAAGAAAAGTACTGATGAGTGATTAATTCTTGCAACATTCCTGTCTTTTGAACTCTAGTCGTGATTCTATATTTTTGACAATTAGGAGTTAAAGACATAAATTTACCAATGCAGACCACAGTGCCAAATTGATCTTCGTATTTTATCATTTTGCTGATGGTTAGTTTTTACAGTTATTTGCACTGAAAGGGAGAGAAGCAGTAGAACCTATCAATCTAAACAAAGAAACAGAAGGCTCTTCGAGTAACAGAACTGAAAATAGCTCAGACATCAACTTAGAAATATCAAGAATGCATAGCCCTGGGCATGGCAATGTAAATCAAGGTATCGCATTTTTTCCTTCTTATAAACAACAAGCTATGACTCAACTCATTCAAAGTTCTATGAAGAACGAGCATGGTTACGCTATAGAAGAGAACTTATGCACCATTTACGGAGGAATGGATGATCAGTCTTCGGCATTCTGGGCATGGTCAGAACAACATAATTTCCATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252844.1	3.2e-69	homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03.2	1.8e-45	Homeodomain transcription factor ATHB-13
trEMBL	A0A835DLE0	5.2e-74	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G69780.1	50.33	5e-67	251	ATHB13	Homeobox-leucine zipper protein family

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G00762	AT1G69780.1	302	106	12	1	266	1	294	50.33	5e-67	251
Asa4G00762	AT1G26960.1	275	115	9	1	266	1	255	47.64	5e-57	218
Asa4G00762	AT3G01220.1	214	82	6	59	261	72	275	51.87	4e-50	194

Ortholog group

Species	Genes
Allium cepa	g220774.t1; g534426.t1
Allium fistulosum	AfisC1G05115; AfisC1G05155; AfisC4G00743; AfisC6G00907; AfisC6G03771; AfisC8G00441; AfisC8G03331
Allium sativum	Asa1G04397.1; Asa1G04399.1; Asa4G00762.1
Arabidopsis thaliana	AT1G26960.1; AT1G69780.1
Oryza sativa	LOC_Os03g07450.1; LOC_Os10g26500.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	71	124	56.2	2e-15
PF02183.15	HALZ	Family	126	166	42.7	4.2e-11

Gene Ontology

Accession	Ontology	Name
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network