result

Gene information

Detail information of Asa4G00779

Location

Gene	Chr	Start	End	Strand
Asa4G00779	chr4	222665656	222668252	-

Sequences

CDS

>Asa4G00779.1
ATGGAAGGAGCCGAAAAGATCCTGAAGTGGGCATATAATCAATGGAGCAGTCAATCAGTCTCTTTTGTCATCCTTCATATAAACACCAATACCTTGGATTATGTACAAACTCCTTTTGGAAAGTTTCCATCTAGTTCGCTAAATGATGTGATGTTCGAAGATTACAAGGCTAAAGAAAACGAGAAAGTGGACAACTTCTTACAGAAATATACATCTTTGAACCCTAAGGTGAGAGTGGAATTATTAAAAGTTGATGTATCTGATGGTTATGTCCCTAAAGTTATTGTTGGCTTAATCGAAAGTCTTGGAATCAAGAAGTTGGTTATGGGATTCAATAACACGAAATCAGCATCTTGGAAGGCAAAATATAAGAACATCAACTCTGGTTATGTACAAAAGCACAAACCAAGCTTTTGCGAACTATTTATTGTATGCGGTGGACAACTAGTTTTATTGAAAGAAGATAACCTCGATGAAGGCTTTTACATCGTCCAAGAAAATGGAGCCATGGTTGCAGATTTCAGAAAGAAATATAAAGAAAAAGGAAGTTTCAAAACGTGGTGGAGTAGAAAATCTATGGATAGTCCAAGAAATGATAATATGGATGCAGTTGGTTCCAAATGGGAAGACTATGAAGAAGAGATTGAGACATATGTGCAAGGTTTAGAAGAGTTGAAGTTAGGTGATGATCCTATAAGTGATCAACATTTGCACTCCGCTGAACAGCAGGGCTTGAACAAAGAGGAGATATTGCAAATAATCCAACAAACTAAGTTAAAAGTAGAAGTTGAAGATAAAAGAAGAAGAAAAGCAGAACGAGTGGTATATTTGTGCAACCTGAAGGTCGAGCAAATGCAAGAAAACTATAGAGAAGAAATGACAAAGCATGCAAAATTTAATGAAGAGCTAAACAGTATTAAAAACCAGATACATGTAACATCAAATGACATTGAAAAAAGCAAACTCAGTATAGAATCACACCATAAACGAGATGAAGAACTTGCGTTCAAGCTCCATTGTTATTCATTGCAAAATTCGATGTTGTCTTCTGAATTTCAAATATCAGAAAATGAAAAGGTTGACATGTTGCAAAAAATAAAGGGAACCCAAGAACAGATAAATTTCAGGAAGCAGAGAATTGAATTCTACAAAGAGAGAAAAAAGATTTATGAATCGAAAGTACTTGATTATAGATACAAAGAATTTACGGCAGAAGAGTTGAGAACTGCTACCAACGATTTTTCCGAGGATAATATGATTTCATCAACAATTTACAAAGGAAGAATAGATAACACAACTGTTGCGGTTCATTTCAATCCTTCGTTGAACAATTCGCTCGAGGAATTCAAAACTCAGGTCGAACTATTGAGCCAAGTTAACCATCCAAATATACAAACTCTGTACGGTGCTTGCACAGAACTCATGTGCATTGTACTGGAACACATGGAAAATGGAGACCTTCATACGATTCTCTTCTCTTTATCTGCAAATAACCAGATCATCCTTCCATGGAACACACGTATCAAAATTGCAGCCCATCTTTTATCTGCCATAGGATTTGTTTGTGCCTCAACCGTGCAGCATGTACACTTGCACAACCATCTAGAAACTTCCGATGTGTTCATAAACGCCAAATTCACTGCAAAAATCAAAGTCCTTTGTAACGACATTCCTTCACTAGGACTGATAATTCTTCAGCTAATAACTGGATACGAGGGAGTCAGAATGCAAGAAGTTAAAGCAGCAATTGAGGAAGGGAGAATAGTGCACATTTTGGATGGGAAAGCAGGAGATTGGCCTGTTACTATAGCCAGATCATTCGCGAAAATTGGAGTCAAGTGCTGTGAATACGAAGGCGGCATAAATTTTGTTGAGGAGATGATAAAGGAGATTGATGAATTAGGAGAGAAGGCGGAGGCGCAGGTCGTGCATGACAGAAATGCATGTGCCGAGAAGAAGAACGTGCCTCATAATTTCCTTTGTCCAATTTTGCAGGAGGTGATGAAGAATCCACACGTAGCAGATGATGGATTTTCTTATGAGCTAGAAGCGATAGCAGAATGGTTGAGCAGTGGGCATGACACTTCTCCCATGACTAACTTGAAGATGAAGAACACGCTCCTCACACCTAATCATACGTTGCTGTGTCTTATTAGGGACTGGCAGCGTTATTAG

Protein

Gene

>Asa4G00779.1
ATGGAAGGAGCCGAAAAGATCCTGAAGTGGGCATATAATCAATGGAGCAGTCAATCAGTCTCTTTTGTCATCCTTCATATAAACACCAATACCTTGGATTATGTACAAACTCCTTGTAAGTTGCAACTGCATAATCTTGAAATCTAAACGTGAATGTTAATAGGCAAAAATTTTCTAAAGGAAGTAGACATGTGTGACTACTAGCGACTAAATTTAGCTGATTTTTTAGTTGGAAAGTTTCCATCTAGTTCGCTAAATGATGTGATGTTCGAAGATTACAAGGCTAAAGAAAACGAGAAAGTGGACAACTTCTTACAGAAATATACATCTTTGAACCCTAAGGTATTTATTTGCTTATAATAACTGGGTTATTTTTCTACATTAGATTGATTTAAGAGATTTTTGAATTTGCAGGTGAGAGTGGAATTATTAAAAGTTGATGTATCTGATGGTTATGTCCCTAAAGTTATTGTTGGCTTAATCGAAAGTCTTGGAATCAAGAAGTTGGTTATGGGATTCAATAACACGAAATCAGCATCTTGGTAATCATACATTATACATAATTTTCTAGCTCAGCCCCTTTTTCATGATCATGCAACACTTTGATATATAATGAACATGTAGGAAGGCAAAATATAAGAACATCAACTCTGGTTATGTACAAAAGCACAAACCAAGCTTTTGCGAACTATTTATTGTATGCGGTGGACAACTAGTTTTATTGAAAGAAGATAACCTCGATGAAGGCTTTTACATCGTCCAAGAAAATGGAGCCATGGTTGCAGATTTCagaaagaaatataaagaaaaaggaagTTTCAAAACGTGGTGGAGTAGAAAATCTATGGATAGTCCAAGAAATGATAATATGGATGCAGTTGGTTCCAAATGGGAAGACTATGAAGAAGAGATTGAGACATATGTGCAAGGTTTAGAAGAGTTGAAGTTAGGTGATGATCCTATAAGTGATCAACATTTGCACTCCGCTGAACAGCAGGGCTTGAACAAAGAGGAGATATTGCAAATAATCCAACAAACTAAGTTAAAAGTAGAAGTTgaagataaaagaagaagaaaagcagAACGAGTGGTATATTTGTGCAACCTGAAGGTCGAGCAAATGCAAGAAAACTATAGAGAAGAAATGACAAAGCATGCAAAATTTAATGAAGAGCTAAACAGTATTAAAAACCAGATACATGTAACATCAAATGACATTGAAAAAAGCAAACTCAGTATAGAATCACACCATAAACGAGATGAAGAACTTGCGTTCAAGCTCCATTGTTATTCATTGCAAAATTCGATGTtgtcttctgaatttcaaatatcaGAAAATGAAAAGGTTGACATGTTGCAAAAAATAAAGGGAACCCAAGAACAGATAAATTTCAGGAAGCAGAGAATTGAATTCTACAAAGAGAGAAAAAAGATTTATGAATCGAAAGTACTTGATTATAGATACAAAGAATTTACGGCAGAAGAGTTGAGAACTGCTACCAACGATTTTTCCGAGGATAATATGATTTCATCAACAATTTACAAAGGAAGAATAGATAACACAACTGTTGCGGTTCATTTCAATCCTTCGTTGAACAATTCGCTCGAGGAATTCAAAACTCAGGTAAGAAAAACAATTGGTCTAGTCTCTTTCTTATGAAAACATGATTTGTGTGTATTTCACATGCAGGTCGAACTATTGAGCCAAGTTAACCATCCAAATATACAAACTCTGTACGGTGCTTGCACAGAACTCATGTGCATTGTACTGGAACACATGGAAAATGGAGACCTTCATACGATTCTCTTCTCTTTATCTGCAAATAACCAGATCATCCTTCCATGGAACACACGTATCAAAATTGCAGCCCATCTTTTATCTGCCATAGGATTTGTTTGTGCCTCAACCGTGCAGCATGTACACTTGCACAACCATCTAGAAACTTCCGATGTGTTCATAAACGCCAAATTCACTGCAAAAATCAAAGTCCTTTGTAACGACATTCCTTCACTAGGACTGATAATTCTTCAGCTAATAACTGGATACGAGGGAGTCAGAATGCAAGAAGTTAAAGCAGCAATTGAGGAAGGGAGAATAGTGCACATTTTGGATGGGAAAGCAGGAGATTGGCCTGTTACTATAGCCAGATCATTCGCGAAAATTGGAGTCAAGTGCTGTGAATACGAAGGCGGCATAAATTTTGTTGAGGAGATGATAAAGGAGATTGATGAATTAGGAGAGAAGGCGGAGGCGCAGGTCGTGCATGACAGAAATGCATGTGCCGAGAAGAAGAACGTGCCTCATAATTTCCTTTGTCCAATTTTGCAGGTCTGTCTTCAAACTCATATATCCATACACCTTTAATCTTCtatgaaatgtttaaaataagcCACATACGAACGTTGTTTTAAATCAGGAGGTGATGAAGAATCCACACGTAGCAGATGATGGATTTTCTTATGAGCTAGAAGCGATAGCAGAATGGTTGAGCAGTGGGCATGACACTTCTCCCATGACTAACTTGAAGATGAAGAACACGCTCCTCACACCTAATCATACGTTGCTGTGTCTTATTAGGGACTGGCAGCGTTATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250131.1	9.2e-156	putative U-box domain-containing protein 50
Swissprot	Q9FGD7.1	1.6e-83	RING-type E3 ubiquitin transferase PUB50
trEMBL	A0A6J0PEC9	2.5e-126	putative U-box domain-containing protein 50 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65500.1	32.72	1e-102	371		U-box domain-containing protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G00779	AT5G65500.1	767	445	16	6	721	35	781	32.72	1e-102	371
Asa4G00779	AT2G45910.1	806	469	25	4	721	58	829	26.67	5e-62	236
Asa4G00779	AT3G49060.1	375	182	15	392	722	443	802	35.73	2e-53	207

Ortholog group

Species	Genes
Allium cepa	g10990.t1; g12872.t1; g135041.t1; g164083.t1; g164085.t1; g183438.t1; g183439.t1; g183440.t1
Allium fistulosum	AfisC3G03683; AfisC4G01073; AfisC5G04955; AfisC8G03355
Allium sativum	Asa2G02977.1; Asa2G02979.1; Asa4G00779.1
Arabidopsis thaliana	AT1G01670.1; AT1G01680.1; AT5G65500.1
Oryza sativa	LOC_Os06g06450.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	428	550	38.4	7.4e-10
PF04564.12	U-box	Domain	655	721	45.2	7e-12

Gene Ontology

Accession	Ontology	Name
GO:0000151	C	ubiquitin ligase complex
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0004842	F	ubiquitin-protein transferase activity
GO:0016567	P	protein ubiquitination
GO:0006468	P	protein phosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04730	IRAK1; interleukin-1 receptor-associated kinase 1	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network