result

Gene information

Detail information of Asa4G00937

Location

Gene	Chr	Start	End	Strand
Asa4G00937	chr4	262449682	262452001	-

Sequences

CDS

Protein

Gene

>Asa4G00937.1
ATGCCTCTCACATCACGCCATGCCATTGTCGAGGTTTGTAACTTAACTTCATTATTACTTTATTAACTCTGAGCTGCATGTGTAAttcaatgtttctattatcagtgCACTCCTCTCATTTGATATATGTCAGGGTTGCAGTTTGAGACTTGCGGCTTTGACTGCAACACTATAGTCTGCCTCTTCCTTCTCTGTTGTTCTATCTACTGTCAACCTTTTTCTTACATTCAATAGTCACATAGTTCTGAAGCAAATAATTATATTGTTCTGAATCAAAATTACATATACCCACCGAGTTGATATCAAGTTACATAACATATCATTCTTTAGTCTATGCTCATGTATGCATATACTCGTAATCTGTTTGCTTTGGATTTATCATAAGCAGAAGTATCTGGATATAATATCAAAGAGATCACGTTCTATTAAACCTTTACATGTTATGAAATTTTGCTAATGGGATTTATAATTGCAGAGAACATTCAGTTGTCCAGTTGAAGATTGTCACTTGAGCTATAGAAGGAAAGACCACTTGAACCGTCATCTGCTTAAACATGAAGGAAAACTCTTTAATTGTCCTTTTGAAAAATGCAACAAGACTTTTGCCTTTCAAGGAAATATGACAAGGCATATGAAAGAAATGCATATTGATGACAATATCGTTAGCGACGAATCTTCTGAAGgtgaaaaaaaatatgtttgctCAGAAGAGGGTTGTGGCAAAGCATTTAAATACGCATCAAAACTGAGGAAGCACGAAGATTCACACGGTATGCTAACATTAACGTTAATTGCGACTTGTATGATTTAATAAACACATAAAGTTTTGGTGTTAATTAACTGTTGACCAGCTAAATTTTGCTTCACTTTTAGATGGTTCCACTAAATTTTGTCTCATGTTTGTGATGGCATTTTATGAATTGCATGTTATATTGGTAGTTCATGATGTTTGTTTCCTCCATCTTCAGTGGACAAATGAGATTGTATCATTTATTCGGCTCGTCATCATTTTTCCTTCAATCCGAGTTTACTTTTTATAAACGGTGAAATATCTTCATCTAACACGCTTTGCTGTCCGAGATTCTGATATACTTTTGTTAGGTTTTTATGTATGCTTTTGTAATTATAATCAATCAGCTTAAGTCTGGGTTAACTTGAATCATATGTTCTGCTCATAAATGCCACTTTTTGGAAAATTCAACCAGATCATGCCCAATCATCATGGAACTGGggtagatgatttttatatttgatgaaCTAATCCATCCAAATCTGGAGTCGTAGGGTTGTGGTCATTCATCTTTGTTCAGCTATTAATAAATTTTGCATTTTAGCAGTGAAATTAGAGTATGTGGAGGTTATTTGCGGGGTACCTGGATGTTTGAAGAAATTTACAAATGCTGATTGCTTGAAAGCTCATAGACAATCCTGTCACCAACGTGTTTTATGTGAGGTATGTGGGACCCTACAGCTTAAGAAAAATTTCAGACGTCACCTTCGTATACACGAAGGCTATAGCGAGACCGGGAGGATTAAATGCAGCTTCCCCAATTGCCAGCACACATTTACAAAGGTACACTGTATGCTTTATATAAAAGTAATAATTCTTCCAAACGACCCTGGTTGGATATTAATAGATCATTTTTGCTTGCTGTTGGTTGGATATTAATAGATCATTTTTGTTTGCTGTTCATAGAGATCAAACTTAAATAAACATGTAAAAGCCGTGCATGAAGAGCTCAAGCCATTTCCTTGTCGGATCTCTGGATGTGATCAGAGATTTCCTTATAAACATGTTCGGGACAATCATGAAAAATCTGGAATTCATGTTCATGTGCTAGTAAGTTCGCCTTTACTTTGATTTGCCTTTCGATTTATTATTCACCTAGAAAGAGAAAAGGAGAGCAATTGCAATATGTCCAGATTTTTGGCAGGTCTGGCGCATGCCATAAAATTACTTGTATATAATTTCATGAAATTATGAAGTTTCTTTGTTATACATAATTTTAACGaacgaaaattgaaaaataaaatgaaaaacaagtATATGCACTTCTGCTGAAACTTGAATTTAAGCCTGTTACCCTACTTACTCGCTAAATTTTTTGTTCGAACATGGAATCAGTTTATGATTTTCTGTTTCATTTCATACCAGAGGGATTTTGTTGAAGCTGATGAGCAATGGAGATCACAACCGAGAGGTGGAAGGAAAAGGAAGCATTTCTCGGTTGAAATGCTAATGCGCAAAAGGGTTGCTCCGCCTAGCCAAGATGCTGCAATTGATGATGGAGCTAATTATTTGAGATGGTTGCTCTCCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268699.1	2.2e-100	transcription factor IIIA-like isoform X1
Swissprot	Q84MZ4.1	4.7e-55	Transcription factor IIIA
trEMBL	A0A5P1EJL5	1.6e-100	Transcription factor IIIA

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G72050.2	49.53	4e-84	308	TFIIIA	transcription factor IIIA

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G00937	AT1G72050.2	317	110	1	10	276	90	406	49.53	4e-84	308
Asa4G00937	AT1G72050.1	318	111	1	9	276	1	318	49.37	7e-84	307
Asa4G00937	AT4G06634.1	136	82	3	9	144	74	195	29.41	1e-08	57.0

Ortholog group

Species	Genes
Allium cepa	g375410.t1
Allium fistulosum	AfisC4G00969
Allium sativum	Asa4G00937.1; Asa4G05049.1; Asa5G01944.1
Arabidopsis thaliana	AT1G72050.1; AT1G72050.2
Oryza sativa	LOC_Os02g02424.1; LOC_Os05g03020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0046872	F	metal ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09191	GTF3A; general transcription factor IIIA	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network