result

Gene information

Detail information of Asa4G01051

Location

Gene	Chr	Start	End	Strand
Asa4G01051	chr4	295148867	295151560	-

Sequences

CDS

Protein

Gene

>Asa4G01051.1
ATGGAGAATTTTATCGATCCATTTCTCTCACCTGACTCATGGCCAGACCTAAGTATATCTTCTAGAACATCATGGGAAGACACTATCGCATCCCAAGTCGAAGCAAATGGAGAATCTGCAATAAACGAACCTGTATGCATGATACAAGCAAATGATTTTGATCCGAATTCCAATGGAAATCACAAGCATGTAGCTCAACATGAAACTAACTCAACGTCTGAATCATATGGTCAAGATTTCAATTCTTCATGCTCTGTTACATTGCCGCCTGGCGCTTTTACGATGTCTAGTTCAATCGAAAGTAATGGAAGTGAACCGACTAAATATAGTTCTATTGGTGATGCACACTCGATTTCGTCAGTTCAATCAATGTGGTCACAGTCTTATCCTAATGTTTTTGGAACGCAAATGGTGGGAAATGAGTATTTTATTGATAATGAAGATTACTTGCATATCAATAATACATCTACTGGTGTTCATGTGAGTGTTTTTTGTCTTTTGAGTTTGATATTGGTTGCTTGTGTTGTGAAAAAAATTGTCATTTGCCACTACTTGATGCAGTGAGAGTGATTTCAGGTTAATACAGTAATAAAAACACAAGGGCGTTCAAGACCCTCTCTTATTACTCCACCCCCTTTTGTGATTTGTTAAAGAAGCATATACAAAAACtaacagattttttttattgatatgcTCTATTCATCAGCGAGATCATTTAGACAAAATGCTGAATTATTTTGAAACTTTTAGTCCAATCAAAACCACATTTCGAATTGATGGTTAAAGTGAACATTTTTGGTGGTACATATTGGCTTATGATTTTGATGAAGTTGAAGGTTTCGGGATGCATCAAATTTTTGTAAAGATGATATTGCAAACAAAtgtaacatatttttaattttccctTTGTTTGTGTCATTGTGTAATATCTGTATGTATTATCATTTCAAAATTGCTTAATATGCAAAGGAGactaaacataatttttttatttcagtagaagcaaattcaaacccaaatttctaaaaCTGAATTTTTGAGTTTGGTTATTGGATATTGAGGTCCCAGcaaaatttatgaaataaacaaACTCAGTAAGCTGACCAGAAAGGCATATAGCCTTTGTATTTGTATTACTAATTGGACTCCTGTATGTCTTCTCTGTAGGATTGCAGTGGGCTTCAACCTAAAAATTTGTCAAATTTCAATGGTGGCCAACAAATGAAATTGTCGAATTGTACTTTGCATCTTCATAATCAGGTTTGTCATGCTTTACTgtcatttgatttctattattttcctccttttcttatattttttagttttttattttctttttgggtGAATTATGTGCTTATCAACCTATTGCAAAATTGCAGGAGCAAAATGGGATGAAACGCTTTCAAATACCATCTTTTTCTATGGGGCCAGAATCTGCTTTGAATAATTCACCTGTATTTCATGCTTATCAACAGGTGTGTAGTTCGTAACCATCAATTTTTTTCATAACATGGCTGCAGTTTTAGGTTGTCGTATACCAGTCAACGTTTGATTGCGACTTATTTTCCACATCTTATCGACGTGTGGATTTTTTTTTCCCAAAGTTGCCACGGCCTATTGAAGGAAATATTCTACAGCATCAAGCTGATGATTCAGGTCAAGCTAATAACACTAATGCTTCTAATGGTTCTGCAAAACCACGTGTCCGTGCACGGCGTGGTCAGGCAACTGATCCTCACAGTATTGCTGAACGGGTTAGAGCATGTCTTTATTTTACTGGTATTGTTTACAATTGatgtttaatcaaatattgatcttAACACGAATTATCGTGACACAGCTTCGAAGGGAGAAAATCGCTGAAAGAATGAAGAACCTGCAAGAACTAGTACCCAATTCTAATAAGGTACCTGTGTCTCCGTGCATATACCCATTTCTCTGTGTCTGGGTGTACATATGACACaacaaatgtatttttatctttttttaatgaAGTACGCATATTTAACAGGAGATGACTGTATCTTATTATTCTTAACAAGCTATTATTCGTTAAGCTTTAATAATATTATGTGCAGGCTGACAAGGCATCTATGCTAGATGAGATCATAGAATATGTCAAATTCCTTCAGCTACAAGTCAAGGTTAGATAgacacaaacaattcaaatataaagCATTTAACCAAGTtcctaatataaataaatttacaatattaatttatttcaggTCCTCAGCATGAGCAGGTTAGGGGCAACTGGAGCTGTAGTACCTCTAATTACCGATGCATATGTTGAGGTGCTAGCTAACTTCCATTCTGATTGATAAAAATGGTTTCTGTTatgacaccccccccccccccaaacataTTATGATGTTTTTACAGTGGAAACTAGTAAGTTAGTAACACATTATGTTGATGCAGGGTTCTGGAAATTTCCATTCATCTTCACTCAGCCACAGCGGGTCACCTGATTTATCCGATTCGGAAGAAAGCATGGCCTTTGAACAAGAAGTTATAAAACTAATGGAATCGAACGTCACTGCAGCAATGCAGTTTCTTCAGAACAAAGGATTATGCCTCATGCCCACTGCACTTGCCTCAGCAATCTCTCACCAGAAGGGTTCTGATGCTTCCACCATTCCTGATAGCATCGTTAAACAAGAGGAGTCAATTAGGCCACGGCTCACTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241185.1	3.5e-102	transcription factor bHLH7-like
Swissprot	Q9LSQ3.1	2.1e-43	bHLH transcription factor bHLH082
trEMBL	A0A7M3UQJ2	2.9e-114	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G58010.1	52.31	6e-53	205	LRL3	LJRHL1-like 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G01051	AT5G58010.1	216	92	3	218	424	62	275	52.31	6e-53	205
Asa4G01051	AT2G24260.1	168	64	2	237	403	118	282	59.52	2e-47	187
Asa4G01051	AT4G30980.1	150	42	2	254	403	127	263	63.33	8e-47	184

Ortholog group

Species	Genes
Allium cepa	g36222.t1; g409015.t1; g487029.t1
Allium fistulosum	AfisC4G01133
Allium sativum	Asa4G01051.1; Asa8G00493.1
Arabidopsis thaliana
Oryza sativa	LOC_Os06g09370.1; LOC_Os06g09370.2; LOC_Os06g09370.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	268	313	35.4	6.8e-09

Gene Ontology

Accession	Ontology	Name
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12126	PIF3; phytochrome-interacting factor 3	EC:-	Plant hormone signal transduction	ko04075
K12126	PIF3; phytochrome-interacting factor 3	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network