result

Gene information

Detail information of Asa4G01303

Location

Gene	Chr	Start	End	Strand
Asa4G01303	chr4	356500853	356502742	-

Sequences

CDS

>Asa4G01303.1
ATGCATGCATCAGTTCAGTCGGGAGGCCGTTCGCCAAAGACATTGAACAGTTCCTTATCGAACCATCAAAAAATTGGTGCTGAAAATGTTCAAAAAAGCAAGAAGAGAGAAAGAGGAGGTGAGCAGGGAACAGAACCCAGTAAACGCGGGCATACGAAGTCAATAGATGGAGAATCAATTAGCTCTAGACTTGAGATCATGATGAAAGCTGAGTTCTCAAAAATATCCGATAATGGAGTTTTAGTAACCACAGAAAACGTTGACAATTTAGTTCATGTTATGCAACTGGATAAAAATGAAAGAAAAATTGATTTGGCTGGAAGGTTGTTGGTTGCAAATGTGATTACAGCTACCGACAGAATTGAATGCCTGGTCAGATTTGTTCAGCTCAAAGGTGTTCCTGTTTTTGATGACTGGCTTCAGGATGCACACAACAAAGGAAGAAGTGATGGAAGTAGTCCTAAGGATAGTGATAGAGGTGCCGAGGAACTTCTTTTAGCTCTGCTTCGTGCACTAGATAAATTACCTATAAATCTGAATGCCTTACGAACTTGCAACATCGGCAAGTCTGTGAATCACTTACGCAGCCACAAAAACCCAGAGATTCAAAAAAAAGCAAGGAGCCTTGTTGACACTTGGAAGAAACGAGTTGATGCAGAAATGACAGTGTCTAATGATGGAAAATCTGGTTTTTCTGAAGCTCCTCATGCTGGAGGCAGGCATATGAAAATTTTGACTGCTCATACACCATCTTCTGCATGTAAGATTCTTATAAACAACTCTGACCATGCAGATGATATTATCAAGTCAACATCTGTAACAACAGGTTCTTTGAAACTACCATCAGCGTTACCTACTTCGGTTTCAATAAGCTCAAAAGATTCCCCGATCAAAGTTACTGCCGCCAGTGGGAATTCAGAATTACCCTTGGCATCTGGAAAAGAAGAGAAAAGCACAGGTTCCAGCCAGTCTCTGAACAACAGTCAGACTTCTTGGAGGGAGGACGCTAAGAGCTCTACATCTGGTTCAACGAATGCAAACAAGTGCTGTCAGCATAGAAGGCCAAGCAATGGATATTCATGTAGTAATCAGGAGGGTAATATGGTAGAGGCAAGCAAAGTCTCATGTCATAATGTCGACATGACTAGTTCAGATCAGGGTAACGGCCAGAGATTAATTGTTAGGTTACCCAACCCCGGGAAGAGCCCTGCATGCAAGGCCAATGGAGATACTGTTGTGGAAAATTCAATTCTGGATGAATTTGATCAAAAGATCAAAACAGAGGATGATTCTTTGCGATCTAATACCAACGATGCGAATGCAAAGCTGTGTGAGAGCAGTGACCTTGCAGCCATAATTGATGAAGAGAGCAGGACTGCTGATGAAACAGCAGGTGATGGTATTGGAATCAATCTGCTTGCTAATGTTGCTGCCAGAGAAATGCATACCTCTTCAACATCTCCAAATATGGAATTTCATGCTGCAAATGTCGACTCCAAGTCTAACTTATTGTGTGATGGTAGCATGGCTGTAAAGCGTGCCCATTACGATGAAGTTACAGTTACTGACTGCACAAAGCAAGAAAATTTTGATAAATTACATGAAACAGGTAGGCATCTTTCAGTTGGCAATGGCACTTCATGTCAAATCACAAAACAATCTGTTAATAATGAGGTGAAACCTGATGATAAAGTGGATAGATATTCGTCTGTTTGTATTCCTGTCGACATCAAGGAAGTTGGAGGGCGATAA

Protein

Gene

>Asa4G01303.1
ATGCATGCATCAGTTCAGTCGGGAGGCCGTTCGCCAAAGACATTGAACAGTTCCTTATCGAACCATCAAAAAATTGGTGCTGAAAATGTTCAAAAAAGcaagaagagagaaagaggaggtgaGCAGGGAACAGAACCCAGTAAACGCGGGCATACGAAGTCAATAGATGGAGAATCAATTAGCTCTAGACTTGAGATCATGATGAAAGCTGAGTTCTCAAAAATATCCGATAATGGAGTTTTAGTAACCACAGAAAACGTTGACAATTTAGTTCATGTTATGCAACtggataaaaatgaaagaaaaattgatTTGGCTGGAAGGTTGTTGGTTGCAAATGTGATTACAGCTACCGACAGAATTGAATGCCTGGTCAGATTTGTTCAGCTCAAAGGTGTTCCTGTTTTTGATGACTGGCTTCAGGATGCACACAACAAAGGAAGAAGTGATGGAAGTAGTCCTAAGGATAGTGATAGAGGTGCCGAGGAACTTCTTTTAGCTCTGCTTCGTGCACTAGATAAATTACCTATAAATCTGAATGCCTTACGAACTTGCAACATCGGCAAGTCTGTGAATCACTTACGCAGCCACAAAAACCCAGAGATTCAAAAAAAAGCAAGGAGCCTTGTTGACACTTGGAAGAAACGAGTTGATGCAGAAATGACAGTGTCTAATGATGGAAAATCTGGTTTTTCTGAAGCTCCTCATGCTGGAGGCAGGCATATGAAAATTTTGACTGCTCATACACCATCTTCTGCATGTAAGATTCTTATAAACAACTCTGACCATGCAGATGATATTATCAAGTCAACATCTGTAACAACAGGTTCTTTGAAACTACCATCAGCGTTACCTACTTCGGTTTCAATAAGCTCAAAAGATTCCCCGATCAAAGTTACTGCCGCCAGTGGGAATTCAGAATTACCCTTGGCATCTGGAAAAGAAGAGAAAAGCACAGGTTCCAGCCAGTCTCTGAACAACAGTCAGACTTCTTGGAGGGAGGACGCTAAGAGCTCTACATCTGGTTCAACGAATGCAAACAAGTGCTGTCAGCATAGAAGGCCAAGCAATGGATATTCATGTAGTAATCAGGAGGGTAATATGGTAGAGGCAAGCAAAGTCTCATGTCATAATGTCGACATGACTAGTTCAGATCAGGGTAACGGCCAGAGATTAATTGTTAGGTTACCCAACCCCGGGAAGAGCCCTGCATGCAAGGCCAATGGAGATACTGTTGTGGAAAATTCAATTCTGGATGAATTTGATCAAAAGATCAAAACAGAGGATGATTCTTTGCGATCTAATACCAACGATGCGAATGCAAAGCTGTGTGAGAGCAGTGACCTTGCAGCCATAATTGATGAAGAGAGCAGGACTGCTGATGAAACAGGTAAATATTCTTATTTGTCCTCTGGTAATCGTAAGGGTGCCTCTGTTGCCAAATCTAAATCAAATTACTTTTTTAACTCCACGAATGTTTCGGTTGAAAATTGTGCAAACTATTCTGAAGTAAGCATTTATTTATCAGCAGGTGATGGTATTGGAATCAATCTGCTTGCTAATGTTGCTGCCAGAGAAATGCATACCTCTTCAACATctccaaatatggaatttcatgctGCAAATGTCGACTCCAAGTCTAACTTATTGTGTGATGGTAGCATGGCTGTAAAGCGTGCCCATTACGATGAAGTTACAGTTACTGACTGCACAAAGCaagaaaattttgataaattaCATGAAACAGGTAGGCATCTTTCAGTTGGCAATGGCACTTCATGTCAAATCACAAAACAATCTGTTAATAATGAGGTGAAACCTGATGATAAAGTGGATAGATATTCGTCTGTTTGTATTCCTGTCGACATCAAGGAAGTTGGAGGGCGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264568.1	8.9e-109	uncharacterized protein LOC109840359 isoform X2
trEMBL	A0A5P1EZC8	6.4e-109	BAH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48050.1	39.81	2e-72	270	SUO	BAH domain ;TFIIS helical bundle-like domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G01303	AT3G48050.2	540	248	20	1	472	187	717	39.81	2e-72	270
Asa4G01303	AT3G48050.1	540	248	20	1	472	187	717	39.81	2e-72	270
Asa4G01303	AT3G48060.1	520	241	20	1	462	187	690	39.42	2e-69	260

Ortholog group

Species	Genes
Allium cepa	g316687.t1; g81974.t1
Allium fistulosum	AfisC4G01428; AfisC6G03980
Allium sativum	Asa4G01302.1; Asa4G01303.1; Asa8G03057.1; Asa8G03058.1
Arabidopsis thaliana	AT3G48050.1; AT3G48050.2; AT3G48060.1
Oryza sativa	LOC_Os02g50840.1; LOC_Os02g50840.2; LOC_Os02g50850.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08711.8	Med26	Domain	168	217	53.3	1.9e-14

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17552	PPP1R10; protein phosphatase 1 regulatory subunit 10	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network