result

Gene information

Detail information of Asa4G01819

Location

Gene	Chr	Start	End	Strand
Asa4G01819	chr4	490856551	490858304	+

Sequences

CDS

Protein

Gene

>Asa4G01819.1
ATGCCAGTTCCTCTTGCACCTTACCCAACTTCTCCTGCTCCTGTTTTACCTCCTAATGGTAATTCCTTATTTTTCCTTGCTTATAAACATCAAAATACCGTATAGTTTAGTTCATAGAtttgagaagaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaagtaggcaAATTTTCACCTGTCAGTAAACtatattaatgtatttaaaatagaacTTAACGTACGTTGTAAATACTATAATGTACATAGTGATTTTCGCCAAATAAATCTGTAGAGCTCCGCGTCTCATATCATTTCATGATATATGCATAAATAATGTAGGTGCACAAAGTCAGCTTGTGTGTTCGGGTTGTAGAAATCTACTTCTGTATCCTCAAGGCGCATCATCAGTTTGTTGCGCTGTTTGCAATGCAGTCACATCAGTGCCTCCACCTGGTAATTTCTGTGTCTTAATACATGCCACAAAGCTGTTACTTTTAATTATTTGAGACTGTAAGGTATACTATCGGTGTTATAATACAGAAATTATAGATTTACAACACAAATTGTTCACCGTTTCATTATCTATGTCTGCAAATAAAGACAAAGAGAGACACAAATTGGTAAAGATTTTCCAAATGTCCGTATACACAAAGTTTAATATCTGGAAGATTAATGTGTTGATGTGCCTACCCAAGATATTCTTGCAACTTAATCAACCCAACTTGTAATCGCTAGCCTGTAGATtgtgatttcatttttaaatctgcAGCCTTGAAGCTTGATGTGATAAACATGTGGTCAATATTGTATATGTGTACTAAAATAGTTTCTTAACTTCGGTACCCAGTATAGTTATTTAGATGTGGTGTTCCTTATTCTTGTAATATTTTCGAGTCTATTGTTCACTTCAACTTACATCATacatggtttcaattaaattattttcaaacacgTGTGCATGcgtgcgcacacacaagcacataCATGTACATGTGCTTGTGTTACATGATTTGAACTTTTCCagatttaatgtaaaatatatatgtttCAGTTGATGTGTTAACATCTTTCTGCATTACATGAACATAGGAACGGAAATGGCTCAGTTGGTTTGTGGAGGCTGCCACACACTCTTAATGTACATACGTGGAGCAACAAGCGTTCAATGCTCATGTTGCCACACTGTTAATCTTGCTTTAGAAGGTGTAGTATTATTTTGATCTATCTCCTTAGTACCGTGTGATTCTTGCATTAGTACATATGAATTTATAAGGCATACAAGCTAAACCAGATACGATGTTTAATCAGTTTTCTCTAATTTTTTCCAACTACATTTACTACCAACAATTTTGATCTATTTATACTGTTGCCCAATGTGGGTAtgtacaatttctatttcaaatttgtttcctatTCGCTCTTCTTTGAAACGCTTAATTGTTCATACAGCATATGTCACACAAACTTGTCTAAATTTGTTGTGAGCAATCAAAATGGataaataatcatttcaataatattATGTTGTTCAAGTTTTGAaacctaaataaatgataattacgAACTAGAACATGCATCAAAACATCTGGATAATTTATATAAGTTTACAAACATTGCAGCTAATCAAGTCGCGCATGTGAACTGTGGAAATTGTCATATGTTGCTGAGGTATCAATATGGAGCAAGATCAGTGAAATGTGCAGTTTGCAGTTTTGTTACTTCCGTTGGGGTTGGTTCAATTTTTGTTCAAATTCTTACATTTGATCTATTATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009408105.1	4.5e-17	PREDICTED: protein LSD1 isoform X4
Swissprot	Q0J7V9.1	1.8e-18	Putative zinc finger LSD1
trEMBL	A0A804JS83	3.2e-17	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32540.1	92.86	4e-56	213	LOL1	lsd one like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G01819	AT1G32540.1	112	8	0	21	132	64	175	92.86	4e-56	213
Asa4G01819	AT1G32540.1	74	40	1	17	90	99	171	44.59	1e-10	62.4
Asa4G01819	AT1G32540.3	131	17	2	17	144	24	153	83.97	7e-56	212

Ortholog group

Species	Genes
Allium cepa	g257463.t1; g27384.t1; g505636.t1; g520547.t1; g68999.t1
Allium fistulosum	AfisC1G03106; AfisC1G03653; AfisC1G04191; AfisC1G06782; AfisC3G01178; AfisC3G03766; AfisC4G02342; AfisC4G05349; AfisC5G01983; AfisC6G00323; AfisC6G05402
Allium sativum	Asa0G01868.1; Asa0G02071.1; Asa0G02674.1; Asa2G04002.1; Asa3G00397.1; Asa4G00042.1; Asa4G01812.1; Asa4G01819.1; Asa7G01857.1; Asa7G05663.1; Asa8G01788.1
Arabidopsis thaliana	AT1G32540.2; AT1G32540.3; AT4G20380.1; AT4G20380.2; AT4G20380.3; AT4G20380.4; AT4G20380.5; AT4G20380.6; AT4G20380.7; AT4G20380.8
Oryza sativa	LOC_Os03g43840.1; LOC_Os08g06280.1; LOC_Os08g06280.2; LOC_Os08g06280.3; LOC_Os08g06280.4; LOC_Os08g06280.7; LOC_Os08g06280.8; LOC_Os08g06280.9; LOC_Os12g41700.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06943.9	zf-LSD1	Domain	27	51	42.5	3.8e-11
PF06943.9	zf-LSD1	Domain	66	90	47.1	1.3e-12
PF06943.9	zf-LSD1	Domain	104	128	39.4	3.4e-10

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12191	CHMP2A; charged multivesicular body protein 2A	EC:-	Endocytosis	ko04144
K12191	CHMP2A; charged multivesicular body protein 2A	EC:-	Necroptosis	ko04217

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network