result

Gene information

Detail information of Asa4G01931

Location

Gene	Chr	Start	End	Strand
Asa4G01931	chr4	516794874	516797264	-

Sequences

CDS

Protein

Gene

>Asa4G01931.1
ATGATGCAAGCAGAGGTAGATGAGCAGTTGAAAATGGTGAAGGCGGAGATGTTAGTTCATCCTTTATGGAACCAGTTACTTGGAGCGCACGTGTCATGTCTGCGTGTAGCCACACCTGTTGATCATCTTCCTGTTATAGAGGCGCAGCTTGCGAATTCCCATCATGTCCTTGAGTCGTATGTACCCGGCTACCAGGCTTTTATGTCTCACCAGGACAAGCAAGAGCTTGATGTTTTTCTTGTTAGTATACCTCaaatcttttgttttcctttttctttcttcttctatatGATATGTATATGTCGGTTGTATTATGGGGCTTTTGATATACAATTCCTATAGAAACTACATGTTTTATACCATCATTTTCAAACCCCTctaggttttattattattttaccctttttcttagaaatgaaataaattttgctCCACAAATAAACGGTCTTATCAACGTTATGAGCAGTCACAACTAGAAGTTTTGGACTAAAGCGAAGAGCAAATTGTGCAGGGACAATATTTAGTAGTTTTGAGTTCGTTTAGGGAGCAGTTGCAGCAGCATGTGGGCGTCCATGCCATGGAAGCTGTAATGGCTTGTAGAGATATTGAGCAGTCATTGCAGGAACTTACAGGTATTTGTTTATTGTATCTTTGAAACTACTCAAGTACACAACCAACTGTTTTACTGGTGTTTAATGATGGTTGGTATCCATCCagttttaatctattttgaattgaTGTCGTGTTATCTTTAAGCTATACAATTGTACATAATTTAAAGATGATATACCTGCAGTTTATTAATGTATTTTTTTGTAATATAGAAACTAGTTGCTGTTGAGGGAAGATGAGATGTTGTAGTTTATCTATGTTAGGTGTGCAAGATGTAGGTtaagttttcaatttattttcttcaattgaCACGTTCTCATGTGTAGGTACAAAATTCTAGCAGTCTTGAAAGATAACCAGTTTCCATATAAACCTATTTGCTGATAACTTTGTTGTTGTAACATGAATTTTGAAACCCTTCAAATGGATTACACATAATATAGAGTTTATACTCATTATACACAGAAAAGGTTTGTAAAAGGACTGCTGTTATGGCTTTCAGGAGCAAGACTAGAGGAAGGGACAGGAGCAACTATGTCTGAGGACGAGGATGAACCGCTTCACACCGAAATGCACAACTTGGAGGCTTCGGCTTTCGACCCTGGAAACAATTTCGACATGATGGGCTTTGGGCCGCTGGTACCCACCGAGTCCGAACGCTCCTTAATGGACAGAGTCAGACAAGAACTCAAACTTGAACTAAAACAGGTTGTTACAACTTCTCATACATTGCTAACATGTCATCACATTGAACTCTCCATGTTACTCTTAACGATCGTGCATATAACGTAATTTAACATAATGAATCCTATGCAGCTATCACATGACAATAACTAGTGATATAATAGATCGAACATAGACATGTCATGATCATGTCCTATAAAAGATTGTTACAAATACAAATCTGACAAGCATCAAACTTAGACATTGTTTCGTAAAAGCCgaacaatagaaaaacatcgatcAATTTATAGTAAACATTTTATGTTTGTCCTCGTTTACGTTCTAAATGACAATCACACAAATACCGACTGGACGTCATATAGTTTGGGAGGGTCCTAAATTTTTTTACAACCCTAGATAAAATTGCCAAAAGTTTTGAACCATCAAATGTGccgtttttcagattcattggatcTAACAGCACAGCAGTCATTATGACGTCTAATAGTAGCCAGCTATATAAAGTTTGTAGTTTGGCACAAATTCTGATTACTCACAGAAATGTTTGCTGGCAAATTATTCGAACTACAGGGTTTTAGGTCACGAATAGAAGATGTAAGAGAAGAGATATTAAGAAAGAGGCGAGCGGGGAAGTTGCCTGGGGACACTACGTCTGTTTTGAAGCAGTGGTGGCAACAACATTCCAAATGGCCGTATCCAACTGTAACTGCTTTCTATCGTTTTCAAATGCACATTACTCCCTTAGTATATGAAAGAGAGAACCGAATTTTATGCCAGTAACATAGATAATTCTTTGCATTATTTCACAGAAGTAACCAAAGTTAACTTAATGGGGTTAAATCCAGAATTAATCCAACTAGTTAAGAGCAGTAATATTGGATAtgcatatatacacgtatatatacatatatgtgtgaatgtatgtatgtattctaaATGATGTGTGGTGAAATGCAGGAAGATGATAAAGCTAGGCTAGTGGAGGAGACTGGATTGCAATTGAAGCAGATAAACAATTGGTTTATAAATCAGAGAAAGCGCAACTGGCATAATAGCTCCTCTCAATCAACTTCTAAGTCTAAACGAAGACGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010933995.1	6.2e-108	homeobox protein knotted-1-like 3
Swissprot	P46606.1	4.4e-103	Homeobox protein HD1
trEMBL	A0A6I9RX58	4.4e-108	homeobox protein knotted-1-like 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62990.1	70.29	2e-109	391	IXR11;KNAT7	KNOTTED-like homeobox of Arabidopsis thaliana 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G01931	AT1G62990.1	276	75	4	4	277	20	290	70.29	2e-109	391
Asa4G01931	AT5G11060.1	267	74	4	14	277	124	382	68.16	1e-100	362
Asa4G01931	AT5G25220.2	267	76	4	14	278	160	419	68.16	3e-100	361

Ortholog group

Species	Genes
Allium cepa	g506797.t1
Allium fistulosum	AfisC4G02474
Allium sativum	Asa4G01931.1
Arabidopsis thaliana	AT1G62990.1
Oryza sativa	LOC_Os03g03164.1; LOC_Os03g03164.2; LOC_Os03g03164.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03790.10	KNOX1	Family	13	54	46.7	1.8e-12
PF03791.10	KNOX2	Family	70	120	56.7	1.3e-15
PF05920.8	Homeobox_KN	Family	222	261	63.5	1.1e-17

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15613	MEIS1; homeobox protein Meis1	EC:-	Signaling pathways regulating pluripotency of stem cells	ko04550

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network