result

Gene information

Detail information of Asa4G02412

Location

Gene	Chr	Start	End	Strand
Asa4G02412	chr4	644756223	644758787	-

Sequences

CDS

>Asa4G02412.1
ATGGATTATTTACATTCCCTCATTTTGTATGTGATTAAAATATTGCAAATTTCCTTATTTCTTGTTATGCTGGAACAGTTCAAAGGGCCTGATGAACACACATGTGATCTTAATGAAGCTTCTGTATGCGAAAAGGGGATGCATAAATATACCATCGATGACAAGATTGGGATAAAATGCATGTTTTGCTCCTATGTTCAAATGGATATCAAATACGTATTACCATCGTGGGACTTTAATACTGGAGCTGGATTTGGTCGAAAAGAAAAACTAATGGAAGAAAAACCCATGTTCCTTAGCAAGATATCCAAAACAGAAGAAGAATGCCGTATTTCACACAGTCATTTCGATGGAACTGTTTGGGATCTTATTCCTGGGATAAAAGACAACATGTTTCAACATCAAATTGAAGCATTTGAATTCATGTGGAATAACTTAGCAGGAACAGTTCAAATCAACGAACTGACGAAACACATTGAATCAGATGAAACTGGTGGGTGTGTGATATCTCATGCACCAGGGACCGGAAAGACAAGACTGTCAATAATGTTCCTCAAGTCCTATGTCACTTTTTTCCCTGACTGTAGACCAGTTATAGTGGCTCCACCTGGTTTGCTTCAGACGTGGAAGGATGAATTTGAGAAATTGAGAGTGGATATTGAGGTTTATGACTTAAATGATGATAGAAAACTTTCCATTCAAGATAATGCAATGAAGAATGCTACATTACTAGCTTCTAGAGACACTAGAGCCATCCGCCTAGGGAAATTGCTATCGTGGAGCTGGAGCAAGCACAAAAGCGTAATTTTGGTGAGTTACAATTTGCTGGCACAGAAAGAATCAGAGTTCAGTTCATTTATCCTTGAGAAAGCTGGTTTGATTATTTTTGATGAGGGGCACACACCTAGAAATGATCGAAGTACTATATGGAGCAACTTGAAAAATATTAAAACATCAAAACGCATTATACTTTCTGGTACTCCCTTTCAGAATAATTTTCAGGAGCTTTATAATACACTGAAGCTTGTTCGACCAAAATTTGCTGATAAATTATCTTCTAATGCATCGAAACGACCGAATGGTACGCATAATACGAAGCGGGCAGAACAAGCAGCAAGGAAGAAAGGGAGATTTGTAGAGAAGGATGATGCAGAGAGTAAATGGCACGATTTGACTAAGAATTTAAATGCAAATGATAATGACCTTGATAAGGTCAAGTCAATCATTGAGCCATTTGTGCATGTTCACAGTGGAAACATCCTCGATACGCTTCCAGGTTTAAGGAAGTGCATGCTTATCCTCAATCCTCTCCCTCTACAGAATATTGTGCGAAATAAAATGAACGCGAAGAAGCATAAATGTGCCTTTGAAGAAGATTATCATAATACTTTGCTTTCTATACATCCTTCTCTGGTAATGGCTTTATTACCCGAAGAAGTGAAGCTTACGCTGGACGTGGAAACCTTACAGTATGTTCGGCTATATCCAAATGAAGGAGCAAAAACAAAATTCGTAATTGAGCTGGCTCGTTTATGTGAAACACTGAATGAGAAGATTATTGTTTTTTGCCAATATCTTAAACCACTAGATTTGATAAGGGATCAATTGATCAAGCTATTTGGTTGGAGCGAAGGAAAAGAAATTTTGAAATTGGTCGGGGGATTGTTATCAAACAGCCGGCAGACGCTGATTGACGATTTTAATAATGATTCAGGTAATTCAAGAATATTATTAGCATCAACAAAAGCATGCTCGGAAGGAATAAGCTTAGTTGGTGCTTCAAGAGTGGTTTTACTCGACATCCTTTGGAACCCCTCTATTGAAGTCCAAGCTATAAGTTGGGCACACCGAATTGGTCAGAAAAAATTTGTTTATGTTTATCAGTTGATCACTTCTGGAATGAAAGAGAATGAAAAGGTTTGTGTACAAGCGAACAAGAAGAAAATTTTGAACATGGTGTTTGCTCCAACTGTAGTTGAAGACAGTGCAAAAGCATCTGTTTCAACTTTAGAAGAGATTGACGCGACCAAATTGATCGCTGAAGATAAAGTTTTGGTACAGATGACTGGTCATGCTGCATTCAAAGACATGTTTCAGAATATTTGTTTCCTTTCGAAGGAAACTACTACTGCATTTGTCTTTAATAAACATGAAATTTGTCAGGAAGGGCCTTTCTAA

Protein

Gene

>Asa4G02412.1
ATGGATTATTTACATTCCCTCATTTTGTATGTGATTAAAATATTGCAAATTTCCTTATTTCTTGTTATGCTGGAACAGTTCAAAGGGCCTGATGAACACACATGTGATCTTAATGAAGCTTCTGTATGCGAAAAGGGGATGCATAAATATACCATCGATGACAAGATTGGGATAAAATGCATGTTTTGCTCCTATGTTCAAATGGATATCAAATACGTATTACCATCGTGGGTAAGCTTAGTTTGTTTTTACGTTAAAAATTGTTTAATGTCATTAAGGACTTACTGTAAGTGCTTTTTGATTTGCTACGACTATTAAGTAGTAAGCATATTTGTCCTGCTTAATCAATCTGCTCAATGCTTTTgagtttttatttcttaagcatATAAGAACATTCATTCTAGAATCTAAACATGCttaaaatcaattatcatttagAAAAGCTGTTTATTCAAAATTAATGCTTCAATTATCAATGCAGCACTGGAAGttctttttttccaaaaaaaaaaagaaaaagaaaaagaaaaaaagaaaatgtgaATGCATGTAACATTTGGTTAACTATAACATTGTCCAGACGCTAATAATGCATCCATTAAAATTTCATGTATCTAGGACTTTAATACTGGAGCTGGATTTGGTCGAAAAGAAAAACTAATGGAAGAAAAACCCATGTTCCTTAGCAAGATATCCAAAACAGAAGAAGAATGCCGTATTTCACACAGTCATTTCGATGGAACTGTTTGGGATCTTATTCCTGGGATAAAAGACAACATGTTTCAACATCAAATTGAAGCATTTGAATTCATGTGGAATAACTTAGCAGGAACAGTTCAAATCAACGAACTGACGAAACACATTGAATCAGATGAAACTGGTGGGTGTGTGATATCTCATGCACCAGGGACCGGAAAGACAAGACTGTCAATAATGTTCCTCAAGTCCTATGTCACTTTTTTCCCTGACTGTAGACCAGTTATAGTGGCTCCACCTGGTTTGCTTCAGACGTGGAAGGATGAATTTGAGAAATTGAGAGTGGATATTGAGGTTTATGACTTAAATGATGATAGAAAACTTTCCATTCAAGATAATGCAATGAAGAATGCTACATTACTAGCTTCTAGAGACACTAGAGCCATCCGCCTAGGGAAATTGCTATCGTGGAGCTGGAGCAAGCACAAAAGCGTAATTTTGGTGAGTTACAATTTGCTGGCACAGAAAGAATCAGAGTTCAGttcatttatccttgagaaagcTGGTTTGATTATTTTTGATGAGGGGCACACACCTAGAAATGATCGAAGTACTATATGGAGCAACTtgaaaaatattaaaacatcaaaACGCATTATACTTTCTGGTACTCCCTTTCAGAATAATTTTCAGGAGCTTTATAATACACTGAAGCTTGTTCGACCAAAATTTGCTGATAAATTATCTTCTAATGCATCGAAACGACCGAATGGTACGCATAATACGAAGCGGGCAGAACAAGCAGCAAGGAAGAAAGGGAGATTTGTAGAGAAGGATGATGCAGAGAGTAAATGGCACGATTTGACTAAGAATTTAAATGCAAATGATAATGACCTTGATAAGGTCAAGTCAATCATTGAGCCATTTGTGCATGTTCACAGTGGAAACATCCTCGATACGCTTCCAGGTTTAAGGAAGTGCATGCTTATCCTCAATCCTCTCCCTCTACAGAATATTGTGCGAAATAAAATGAACGCGAAGAAGCATAAATGTGCCTTTGAAGAAGATTATCATAATACTTTGCTTTCTATACATCCTTCTCTGGTAATGGCTTTATTACCCGAAGAAGTGAAGCTTACGCTGGACGTGGAAACCTTACAGTATGTTCGGCTATATCCAAATGAAGGAGCAAAAACAAAATTCGTAATTGAGCTGGCTCGTTTATGTGAAACACTGAATGAGAAGATTATTGTTTTTTGCCAATATCTTAAACCACTAGATTTGATAAGGGATCAATTGATCAAGCTATTTGGTTGGAGCGaaggaaaagaaattttgaaattggtCGGGGGATTGTTATCAAACAGCCGGCAGACGCTGATTGACGATTTTAATAATGATTCAGGTAATTCAAGAATATTATTAGCATcaacaaaagcatgctcggaaggaaTAAGCTTAGTTGGTGCTTCAAGAGTGGTTTTACTCGACATCCTTTGGAACCCCTCTATTGAAGTCCAAGCTATAAGTTGGGCACACCGAATTGGTCAGAAAAAATTTGTTTATGTTTATCAGTTGATCACTTCTGGAATGAAAGAGAATGAAAAGGTTTGTGTACAAGCGAACAAGAAGAAAATTTTGAACATGGTGTTTGCTCCAACTGTAGTTGAAGACAGTGCAAAAGCATCTGTTTCAACTTTAGAAGAGATTGACGCGACCAAATTGATCGCTGAAGATAAAGTTTTGGTACAGATGACTGGTCATGCTGCATTCAAAGACATGTTTCAGAATATTTGTTTCCTTTCGAAGGAAACTACTACTGCATTTGTCtttaataaacatgaaatttgtcAGGAAGGGCCTTTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263134.1	5.5e-193	SNF2 domain-containing protein CLASSY 3-like
Swissprot	F4I8S3.1	6.5e-146	Protein CHROMATIN REMODELING 31
trEMBL	A0A5P1F4K0	4.0e-193	Helicase ATP-binding domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G05490.1	41.20	1e-150	530	chr31	chromatin remodeling 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G02412	AT1G05490.1	716	330	17	40	708	728	1399	41.20	1e-150	530
Asa4G02412	AT3G24340.1	704	373	15	27	714	470	1131	38.78	3e-133	472
Asa4G02412	AT3G42670.1	703	381	19	34	684	578	1240	32.72	7e-86	315

Ortholog group

Species	Genes
Allium cepa	g127968.t1; g127970.t1; g336082.t1; g392531.t1; g422816.t1
Allium fistulosum	AfisC1G00240; AfisC4G03304
Allium sativum	Asa0G03973.1; Asa0G05279.1; Asa4G02412.1; Asa4G02413.1
Arabidopsis thaliana	AT1G05490.1; AT3G24340.1
Oryza sativa	LOC_Os02g43460.1; LOC_Os05g32610.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	132	350	68.8	3e-19
PF00271.28	Helicase_C	Family	511	619	50.8	1.6e-13

Gene Ontology

Accession	Ontology	Name
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0004386	F	helicase activity
GO:0005524	F	ATP binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10875	RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein	EC:3.6.4.-	Homologous recombination	ko03440

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network