result

Gene information

Detail information of Asa4G02647

Location

Gene	Chr	Start	End	Strand
Asa4G02647	chr4	706159987	706162062	+

Sequences

CDS

Protein

Gene

>Asa4G02647.1
ATGGGAAGAGGAAGAATAGAGATAAAGAAGATAGAAAACCCAACTAATAGGCAAGTCACTTATTCAAAAAGGAGGCTTGGAATTATGAAAAAGGCCAAAGAGCTCACTGTTCTGTGTGATGCTCAAGTAGCTGTCATTATGTTTTCCAGCACTGGCAAATTTGCAGAATACTGCAGCCCTTCTACCAGGTCATCAACACAAATTATTCTCTTCGTACTACATACATTtgttttgatctttatatatgaaatggtCAGTCGTGTCtgattatatgatgtgatacaGCACCAAGAAGATTGTGGACAGATATCAAAAGGAAACCGGCATTGATTTATGGAATGATCTTTATGAGGTAACTGAAAATGTGCATGTTTTTTCTTTATCAATAATCTATATATTTTAGCCTGCATGTAAAATTATGTCTGGTTTGATGTAGAGGATGCAAAGTACATTGAGGAGCCTTGAAGAAGAAAACCAGAAACTCCGAAAAGAAATAAGGTGACTAGAATACAAGTTATGCCTACTTCTCGTCTGTTTTATCActgattttgttatatacaatTCTGTTTTTTGCAGGCAGCGAATAGGAGAAGATCTTGATGGACTGAGCATCAATGAATTGCAGGTACTTGAGCAAAGTTTGGATGACACACTTATCCATGTTCGTCAAAGGAAAGTAAGTTTTATgcttaatatttatatttagaatttTCTTGACCGATTTTCCCCCCTTAtattttccttccttccttttcctttttttctttttagtaaGTCAAATAGGATAGGGGCGCAGCATGAACAGGACTATTTGCTACTATATGATGGCCACACAGTGAAAAATAACAGCAATTCGATTGTATTTCTTATGTTGCTGTGTATATGGAATTTCATATGTGTTGCaccatcaaaaataaaaaatagtctGTTCCTATTGTTCTAAGGATTTACTGCCTTCTCGGAATTCATGAtgaggaataaataaaaataaataaataaataaataaacatacgcCTTTGAGCGTTTATGGGATTTTAACACATGTTTCAACTTCAAACGTTGATCCTTGACTACGGTTGGATCCAAAATTTGGTCTATTGTAATATCATAAATTTATTCCATGAAACTATCAAATAAATGCATATGTAAGGTGTCATATGTAGCTTTGGTCACAGTAAACAATGGTATTGGTATAAAGGAGTACTGATTAACTAGTTTTTGAATGATTCAGGCATGTCAAgggatttcaaatcaaaacaagtgtttgaatttttttatttaaaattaataactaTAACTAATTCAATGATTATCTGTTggtaatatcaaaaaaaaaaaaaaaaaaaaaaaaaaactccgttTTGTAATGCATAGAAGATTCTCTTGTTGTGATTGGAGTTATAATGAACATATTTGGTTTTTAAATTGTTAACACATATGTGTTGTTGCAGTATCATGTTATAGCTACGCAGACAGAAACATACAAAAAGAAGGTACGTTTGCAATATCCCAGTTATCATTCTATATAATTTCTACATCTATATTTGTACTGTAATGCATACTCTACAAGCACAAGCTAGCACGGACACTGGTTCAAACAAAAACTGTGACTCAGAAAAAGTTTTCctctaaaacaattatttttattcttacaAAAACATGATTTgcggaaaatttaattttaaacatgaagtcatataaaaattatttccaacAGAAGAAAATGGCAAAGTACTAAATTTCATTCTACCTGTCAATTTCTGTAGTTGAAATGCATCCACGAAACACATAAGGCCTTGCTGCATGCACTGGTCAGTAAATTCAGAAAACTCAGTCTGTGTAAAGTTTCATCAAAATAGCAGTGCAATATTTTGAACTATCTGTAATGCTGACATGTTTTTCTATATTTGGTACAGGACATGGAAGAAGATCAACATGAATATGCTTTCATGACTGAAGATGCGAATGACAATTTAGAAGCCGATGGTATGCATATGTTTACTTTTCCAGTACGTCCAAACCACCAAAATGTTCTAGGTTTCGGTTATGGAGCCCACGACCTGAGCCTTGGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263645.1	2.4e-78	MADS-box transcription factor 16-like isoform X1
Swissprot	Q944S9.2	1.8e-59	Protein SUPERWOMAN1
trEMBL	G8FNH6	2.9e-78	APETALA3-like protein 4 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54340.1	47.60	5e-48	187	AP3;ATAP3	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G02647	AT3G54340.1	208	105	1	1	204	1	208	47.60	5e-48	187
Asa4G02647	AT5G20240.1	214	110	5	1	205	1	199	37.38	2e-33	138
Asa4G02647	AT2G45650.1	217	116	6	1	208	1	210	39.17	1e-31	133

Ortholog group

Species	Genes
Allium cepa	g137611.t1; g424573.t1; g536218.t1
Allium fistulosum	AfisC1G01208; AfisC1G02131; AfisC3G01125; AfisC4G01915; AfisC4G03414; AfisC4G04014; AfisC7G06283; AfisC8G05089
Allium sativum	Asa0G00348.1; Asa4G02647.1; Asa4G03347.1; Asa4G03348.1
Arabidopsis thaliana	AT3G54340.1
Oryza sativa	LOC_Os06g49840.1; LOC_Os06g49840.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	81.0	2.8e-23
PF01486.14	K-box	Family	84	167	68.2	4.9e-19

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network