result

Gene information

Detail information of Asa4G03248

Location

Gene	Chr	Start	End	Strand
Asa4G03248	chr4	880768052	880771825	+

Sequences

CDS

Protein

Gene

>Asa4G03248.1
ATGACCAATGTTCTTCTCCTTTGCATAACCATTCTTCTTACTGTGAGGCCTTCTCATGGTGATCCCACCAATATGGATCCTATGAAATGTTCTAGATCTTCACTTATCCAGACATGCAAATCCACGTTGTATATTGCTACTTATAATGGCCTATCCAAGTCTAATGTTGCGTCCATTTACTCTGCTAATACAAGTCTCATAGATACTGTAAGTAGTCACTCTAACATACTAAATCAAACTCTTATACATTGATAGAGATGAATAGGACACTGACCATACAATAGATACTTCAAACTAGTTGAAAGGATTTATTCATTGATGTTCACTCAACACCCTTGCACCAATCAGAATACTTACGAAACTTCTCTCAATTTATGTTAGAAGATGTGCAATCTTATTAAAAttgtatatattaatattgcaTAGATTGTTCGACAACAAAAACATGAAGATTTTCTAGCACAAGTGCCATGTCAATGCGAAGACATTGGTGGTGGCATCAATGCCTACTTCCATGATACGAACTACACGGTAAAGGCCGGTGACTCTTCAGACAGTTTGACAAGAATTGAGTTCAGCGGCTTAGCATGGAACATAAATGCCACGCTTGATCCTGATCAAAACCTAACTGTGCATCTATTATGCGCAtgtgattcaaattcaaattcaaattcagatggCAGGAAAGATATTGTAAGCTATACCGTGCAAAAGGGGGACACACTGTCTACTATTGCTGATTTGTTATTGGCAGATGTGGAAGTAATAAAGAGTTTAAATGGGAAGCTTTTGAAAAACCCGGATTTTTTGATTCCGGGATATGTGCTGTTTGTGCCCATGGGAACAGCTAAAGATGGTGGTAAGTATCTATTATTAGTACTGGCTAGCATTTTTACACGCTATGCTCATTCATTGAATCATTTTATAGTTGTCAATGATGTTATTTGTTTGTTCGCACATACCATACATTTTATTTACCAATATGGACAACAACTTGTATGCATTGTTTGTTGTATTAGCAATTTATGCATGTGTACGTACACATGTCCGTGCATACACATACATATCTTACATGTGATGTGTGTGAGTGTGCATACACATACATACTCGcaaatgtgcatgtgtgtgtgtgagtgtgttaTGTTTTTGGACAGTTTTGAATTAAAAGTCTCACAAACGCAAACCTTATTTTACGATCATGATCTGTTGATGACTGATgccatttattttcagttatattcTATTTCTGATTGTACGTGAATTTTTGTGAGTTTGTTTGTTGAGCTCTGTCAAGGTGTCTTTTACTCGTGGATCCCCCAAGAGAAACTCAGAAGACCgtgctttttttttaaatttttttgtgtGTCCCACTGCTTTCTGTAGTGGAGCCCACGAGTAAAGGTGTCCTTAGCTTTTTTTTCATGGACTACTTGTGCTCTGTCTTTCACTGCCAGAGGGCGTCCTGGATTCTTGCTGATTTAGAATCCAAAATCCATAACAATATTCAATTGTTATATATCCTTCTGGACTTTATGCACcataaatcaaatatcaaaatcattctgaacataatgtaacataaagttaataaaaaaatattcttgtattcagataTCACACCGGGAAAAAAGAAAAGGGACAACATTGCACTGATTCTAGGCATCACATTTTCAATAGCTTTCATTGTATTAGGAGTTCTACTAGCAATCTACCGTAACTGGAAGCAATCACATAAAAAAACCTCAGAACCACCAAAAATGATGGAAAGAAATACAAGCCTTATGAGCATTGCCGCACTTGAGAACCAGTACCATCACAAAGATAACATGCAAGGTAAGGCAGTTTCTACATATTATGTTAATTTTGTGTAAGCTACAGCATGCTGAAGATTATTATGTGTATATGTAGACATAGAACAAACAGACACCGAAAGACCAATCATATTCAGTCTGCCCGATGTGGAAAAGGCTACTTTAAACTTCGATGAAACAAGGATGATTGGAGAAGGTGGCTTTGGTCATGTATATTATGGACTGATTGGAAATCAggttttaaagaaaaaaagattTCTCAAtaacgtgaactctccccctgaatctcatccGTTCAAtcttcccactcattctctctcttagtggtaagagagagaatgagtgggggattgaatgaatgagattcagggggagagttcacgtgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatggttcaaaTTTCTACAGTTTCGGACTTAATTCTTATGTTGTCATAGGAGGTTGcaataaaaagaatgaagtcaagcAAATCGAAGGAGTTCTTCGCAGAGCTTAAGGTGCTATGCAAAATACACCATATAAATGTGGTATGATATCTAAACATCCAAACATAGAGACAATGAATCATTGTGAAATATCCAATGTCTTATTGTGTTGATTTGACTTATCAACAGGTTGAACTGATTGGGTATGCTAGTGGCGATGACCATTTGTACTTGGTCTATGAATATGTTCGCTATGGTTCTCTTAACGATCATCTCCATGATCCATTGCTAAAAGGTATAGCAAAAGCAAACGCTATAAAGTGTTAACTTCTTATCGCTTCCATAAATTGAAGTGCCTTATATTGTGACTGTTGCAGGTCATCAGCCTCTTTCATGGAATTCAAGGGCACAGATCGCACTGGATGCCGCAAGAGGGATCGAGTACATTCATGATCATACGAAAGCACATTATGTGCACCGCGACATAAAAACCAGCAATATTTTACTGGACGAGGGACTCAGAGCTAAGGTCACTTTACCTATCTATAATATGTGTTGAACAGAATGCACAGCTCAATGTGCATGCATAtcagaaatgaaaaattgaaatagTCAAGTTGCAGGTGGCAGATTTCGGTTTAGTGAAGCTTGTTGAGCGCAGCAGTGAAGACGACTGCATGGCAACTCGCTTAGTTGGAACTCCAGGCTATCTTCCACCGGAGTAATTGATATTTCATATTCATATGTATTTGTAGTTGGTGTACAACATATATAATGCAGAATGAAAAGTTGACAATCAATGATACATGCCTATAGATCAGTTCGGGAACTCCAGATGACATCGAAAGGAGATGTCTTTGCATTTGGAGTGGTTCTAGCAGAGTTGATAACGGGTTGTCATGCTCTTATGCGCGACAACAAAGAAGAACGCAAGATGAAATCACTTATTTCAGTCGTAAACTTTCTCGCACTAGTTTAAGTTTTTGTATCTGATACAACGATTATGTATTATTTAATGGATCTGTAAAAGTAAACAGATGCGCAAAGTATTTGAAGAAGATGACCCTGAAGTAGAGCTGGAAGCTATTGTTGATGGCTACCTAGGAGACAACTACCCAATGGAGCAAGTTTATAAGGTGTGTTTTGTAGAATAATGAGCATGGGCTATTCACAAGAAGCActctatgtatatgtatatgtatatctacgtatatgtatatgtatatgcgtaTGCATACAAAGATACATAGCAAATTAATCATCTGTTAAATAGTTTTTTTGTTAACAATATGTACAGATGGCGGAGATTTCGGTCTGGTGTTTGGACGAGGAACCTGTGGATCGTCCAGAAATGAGAGAGATAACTGTAGAACTCTCTCAGTTGGtaatggcttcaaaagaatgggaggCGTCACTTGCTGGCAATGGTCTAGTTTTTAGTGGTGTTTTTGATGGTAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265215.1	2.3e-216	lysM domain receptor-like kinase 3
Swissprot	F4IB81.1	4.4e-95	LysM domain receptor-like kinase 3
trEMBL	A0A5P1EVG3	1.7e-216	LysM domain receptor-like kinase 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G51940.1	50.91	4e-98	355	LYK3	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G03248	AT1G51940.1	330	156	1	293	616	322	651	50.91	4e-98	355
Asa4G03248	AT3G21630.1	546	310	14	72	599	78	601	35.90	4e-83	306
Asa4G03248	AT2G28590.1	325	175	8	288	601	68	383	40.00	5e-57	219

Ortholog group

Species	Genes
Allium cepa	g99300.t1
Allium fistulosum	AfisC4G00440
Allium sativum	Asa4G00766.1; Asa4G03248.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g36550.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01476.17	LysM	Domain	161	206	25.8	7.4e-06
PF00069.22	Pkinase	Domain	313	584	170.1	5.1e-50

Gene Ontology

Accession	Ontology	Name
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation
GO:0016998	P	cell wall macromolecule catabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network