Detail information of Asa4G03347


Location
GeneChrStartEndStrand
Asa4G03347chr4909130464909140580-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAFX61404.13.0e-87deficiens
SwissprotQ944S9.23.4e-51Protein SUPERWOMAN1
trEMBLK7WHJ32.2e-87Deficiens

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G54340.141.063e-35 144AP3;ATAP3K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag137611.t1; g424573.t1; g536218.t1
Allium fistulosumAfisC1G01208; AfisC1G02131; AfisC3G01125; AfisC4G01915; AfisC4G03414; AfisC4G04014; AfisC7G06283; AfisC8G05089
Allium sativumAsa0G00348.1; Asa4G02647.1; Asa4G03347.1; Asa4G03348.1
Arabidopsis thalianaAT3G54340.1
Oryza sativaLOC_Os06g49840.1; LOC_Os06g49840.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain104257.46.7e-16
PF01486.14K-boxFamily4012572.81.8e-20

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.