result

Gene information

Detail information of Asa4G03473

Location

Gene	Chr	Start	End	Strand
Asa4G03473	chr4	946375790	946377777	+

Sequences

CDS

Protein

Gene

>Asa4G03473.1
atGGGAAGGGGGAGGATTGAGATTAAGAGGATCGAGAATTCAACGAATAGGCAGGTCACCTTCGCCAAGAGGAGGAATGGAATTATCAAGAAAGCGAAGGAGATTAGTGTTCTTTGCGAGTCAAAGATTGGGATTGTTGTCTTTTCTAGTATGGGCAAAATGAGCGAGTACTGTAGTCCCAATACTAGGTATGCATTTTATCTTGTTTTAGAGCTTTGAAATTTGTGATTTGTTGGTAGCTTGTTGTCTGAATACTCTTCTGATTTTGTATGGATATTAGTCTATGGTTGTTGCAGCATTGATTTCCTAAACGCTTGGTCGGATCAGATAAATCTTGAAAATAACACTTTGTCACCCTAGCTTAGATTCGGATCTTTGTTTGTGCTTATTTGAACCATACAGCGGCAATGCTATTCTTTTATTCATAGAATTTTGTGGATCTTATCCATGACATTACTGTTGATGAATCCTTTAATAACTTAACAATCTACATTTGTAAGGTAGGTAACACAAGAACTGTGTAGTGGAATAGAACTTTGAACGATGACATGTggattggtttttctttttcttctgccTTCCTGCTAATCCAGCATGGTCCAAACCagtctattttaaatttatatataagttcAATTGGTATTGTTCCTTCAATTTATGATTATTCTCAAGTGTTGCTCgtgtacatatttttttttctttctttttcaaatatgatttgaagCTTTCCATCGCTCTTGGAAGAGTATCAACAGCACTCTGGGAAaaagatttgggatgcaaagcaTGAGGTAGAAAGCAAATAATTAAGCTGTTCTCATTTCTCAAATTGAAGGTCAAATTAAAGCAGTTATTTTACATATGCTTTTTTTAGAAACTGCAAGCAGAGATCGATAGGATCAAAAGAGAGAATGACAACATGCAGATTGAGTTGAGGTTATAATTTCTATATGTCCAACTAAAGCTTTCTTATCTATTTTATCATTTTttatctattttatcatattttttttaaaaacacacacacacacacacacacacacacacaatgcagtGATTAGTTTATGCTGTTGTTTACAATAGGCACTTAAAAGGTGAGGATATCAACTCATTGCAGCCTAAGGAACTCTTACCTATCGAAGCAGCTTTAGAAGATGGTGTAACTAGTGTTCGTAATAAGCAGGTAGCATTGGTTCATTATACTCGTCATTTCGAATTTGTTTACCGAAGATTAAACGTAAAGGGAAGTGCTCTAAATTTATTTTACATATGCTAATTTTGCATATTTAAGCATAAAAAGACTGATATTTTGATTTTAATCATAACAAGCAGTTTAATTTCATAATAATCCCTAGTCATGTTTTGCTTGGATCACCTATTGTTTGAATTGCATAAGGCGGTTAACATAAAGTTCAGATATAACAGTCTTTTGCTTACATTATAGTATCTGTTCAGTTATATTAGATTTGTAATATCTGAATTGCTTTACATGTAAAATATGATTTAGTCCAATTTATTGCTGACTGGATGGTAAGTTCAAAACACAATGCATGAACATTCCTAATTTAGCCTACAGTTTTCCAGCctcctaataataataatattagacaAGAACTGTCATGCACAATATCTGAAAGAATCTCAAAGCTAGCACCTTTTAGTTTTACATTGCCTTATAATCTTCTTTGTGAAGAGTCTGAGAAAAATACAGACGTTTTAGTTGGCATTTGCTTTCAATTCGTATGACATGTGCTATTATTTTACAGATGGAATACCTAAAGATGCTCAAGCTAAACGTAAGTAtctaagagaaagaaagaaaaaagcccttttgcttttttttttttttttttcttgctagCCTCTTATTGTTTCGTCTCCgaagttaaaatcagttttaactgaTTTGAGCTGAACAATCTGTGCAGGGTAAAATCCTGGAAGAGGAGAACAAGAAGTTGAGCTACGTTTTGGTAATTGATCCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	AQT41500.1	2.5e-74	PISTILLATA-like MADS box protein
Swissprot	Q40702.1	6.3e-54	RMADS219
trEMBL	A0A1S6LR00	1.8e-74	PISTILLATA-like MADS box protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G20240.1	55.49	9e-51	195	PI	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G03473	AT5G20240.1	164	63	1	1	154	1	164	55.49	9e-51	195
Asa4G03473	AT5G23260.3	152	82	1	1	150	1	152	44.74	5e-35	143
Asa4G03473	AT5G23260.2	153	85	1	1	151	1	153	43.14	7e-34	139

Ortholog group

Species	Genes
Allium cepa	g207394.t1; g497977.t1
Allium fistulosum	AfisC4G03876; AfisC5G04013
Allium sativum	Asa4G03072.1; Asa4G03473.1; Asa4G03475.1
Arabidopsis thaliana	AT5G20240.1; AT5G23260.1; AT5G23260.2; AT5G23260.3
Oryza sativa	LOC_Os01g66030.1; LOC_Os01g66030.2; LOC_Os05g34940.1; LOC_Os05g34940.2; LOC_Os05g34940.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	74.4	3.2e-21
PF01486.14	K-box	Family	82	150	57.9	7.6e-16

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network