Detail information of Asa4G03475


Location
GeneChrStartEndStrand
Asa4G03475chr4946914431946920532+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAQT41500.12.7e-105PISTILLATA-like MADS box protein
SwissprotQ0HA25.25.8e-68VvMADS9
trEMBLA0A1S6LR002.0e-105PISTILLATA-like MADS box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G20240.152.712e-59 225PIK-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag207394.t1; g497977.t1
Allium fistulosumAfisC4G03876; AfisC5G04013
Allium sativumAsa4G03072.1; Asa4G03473.1; Asa4G03475.1
Arabidopsis thalianaAT5G20240.1; AT5G23260.1; AT5G23260.2; AT5G23260.3
Oryza sativaLOC_Os01g66030.1; LOC_Os01g66030.2; LOC_Os05g34940.1; LOC_Os05g34940.2; LOC_Os05g34940.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105773.75.2e-21
PF01486.14K-boxFamily8216263.21.8e-17

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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