result

Gene information

Detail information of Asa4G04755

Location

Gene	Chr	Start	End	Strand
Asa4G04755	chr4	1298423839	1298427181	-

Sequences

CDS

>Asa4G04755.1
ATGAGTTCCTCCCCCATTGAAGAGGAGGCTTGCGAGGGCGGGAGAAGAAGATTCAGCGAAGAACAGATTGAAGCTCTAGAAAGAGTTTTTACTACTTGCCCTAATCCTGACGAAGGTCGAAGAATTGTGATGAGCAGAACATTAGGGCTGAAACCAAATCAGATAAAACATTGGTTTCAGAATAAAAGGACTACTATTAAGATACGAAACGACAAGATTGGCAACATGCATCTTGGTGATGAAAACGACATATTAAGAAGTGAAATCGCTGAGATGCAAACAACACTGAGAAATTGTGCGTGCTCACAATGTGGAGTTCAATTATCATCTAAAGAAGAAGAAGAGCACCTGCTTCTATCGAACGAGACTGTCAAGACTGAGATTAATCAATGCATGGAAATTATAACCAACCAGCTTGGAAGGTCATTTGCTGACATGAATTTGATGCAGTTTTGTCCTTTAGGAATTGATAATGATGTACCAAATAGCACTTCCACAAATACTGCATTCCCGCCACCACCAAACCAACAGCAGCAGCAGATTCCTGTTCTTGGCGGGATCTCAAGCAGTGATAAGGCAATGCTAGTAGAGCAAGCAACAAATGCCATGCAGGAACTTGTAGAGCTAACCAGACCAACAAGCCTGTACAGGATCAAGCCCATGTACGAAGACAAGGAAATTCTCTATCTTTTCAGTTATGGAAAGACTTCCAAAGGGATCGAGCATCGTTTGCATAACAATGATATTCATGTTGAGGCTTCAAGAGCTTCTGGCCTTGTGTGTATGAATTCTCTTTCTTTGGTTACCAAGTATGTGGGCCTATTTCATTCTGTTGTGGCTAAGGCAAATATTATTGATGCCATTTCTGTAGGAATGGGTGGAAATAATCACAATGGATCTTTATTGCTGGTATTTAATGAAATTGGAATTCTTAGTCCATTCATCCTATCTCGCGAATATTACTTTGTTCGCTACTGCCAGAGGTTCAGTAATGGTTCTTGGTTTATAGCCGATGTGTCAGTTAATTTTCTAGGCTTTTTAGCAAAACATAGAAGGTTGCCTTCGGGTTGCATGATTGAAGAGACGCCTAATGGTCACTCTATGGTCACTTGGGTAGAGCATACAGAAGTAGAAGAAATCAATCATAATCTTGGTGTCTTCCACAATTATATTCGTAGCAGTACGACATTTGGAGCTCAGCACATGTTACCAACACTTCAAAGAATGACTGAGAGGTCTTATTACTTGTGGATGGTAGGGCCTCAAAGCTTAGATACTGGAGGAGTTATTTTGACGCAAGATAGCAAAAGAAGCTTAATGTCTTTATCCCATAGCGTGGTGAGATCATTTTGTAGTAGCCTATTTCCTTCAAATGATTGGATTATTATCATGGACTCTAACGAGACCAAAATTCGAGCTCTTCCAAATCAAATCATAGATAACTTTGGGTCTGGTGGAATCGTTCTTAATCTCGTAACCTCTACATGGCTGCCTTTTTCTACTGAACGAATTTTCAGCTTCTTTAAGGATGAATCAAAAAGAGATTTGTGGGATATTTTATCAATTGGAAGTATCATGCAGCCAGTCACAAACCTCTTCACTGGTTTTAATAGTGAAAATTGTATCTCGCTTCTATGGGTAAGTTTTCCTCCTGGGACTTCAGACGGGAACCCGATACTACTGATGCAAGAGACAACGGTGGACTCATCAGTCTTAATGCTGGTATTCACATCAATTGACCATTCGATTATGCAGATTGTACTGAATGGAGGTGAAGCACGAAACATCCCTCTCTTTTCTTCGGGAGTTGCGATTTTACCGAGTTGTCCTTCATTGACGAGCAGACCTTCTAGTAGTTCAAATCCAGTAGTCGCTGGTTCATTCCAAACTCTGTCATTTCAAATTCTGTTGAACTGTCAGTCTACAGACGTGGATTTGGACACGTTAAACAGATGGTGTAGACTGATGCTAGATAAAATGAAGAATGTGAAGACTACATTGAACTCCCCTTGA

Protein

Gene

>Asa4G04755.1
ATGAGTTCCTCCCCCATTGAAGAGGAGGCTTGCGAGGGCGGGAGAAGAAGATTCAGCGAAGAACAGATTGAAGCTCTAGAAAGGTAATTATGCTCATTTTTTATGTCGGTTTTTCTCCCTTTTTATACTTTGACATCAAGTAGTGGGGCCtggttttattttacttttaatggATAGAGTTTTTACTACTTGCCCTAATCCTGACGAAGGTCGAAGAATTGTGATGAGCAGAACATTAGGGCTGAAACCAAATCAGATAAAACATTGGTTTCAGAATAAAAGGACTACTATTAAGGTATGGTTTTTATTATCCAGGTTTTCATTTTATACCGTAGTCACTTtttttattcccattaattttatctccTAACTGATGTGCTAATTTGGTTTGATAAATAAaccatatttataatttcattttttttaatatagatacGAAACGACAAGATTGGCAACATGCATCTTGGTGATGAAAACGACATATTAAGAAGTGAAATCGCTGAGATGCAAACAACACTGAGAAATTGTGCGTGCTCACAATGTGGAGTTCAATTAtcatctaaagaagaagaagagcacctGCTTCTATCGAACGAGACTGTCAAGACTGAGATTAATCAATGCATGGAAATTATAACCAACCAGCTTGGAAGGTCATTTGCTGACATGAATTTGATGCAGTTTTGTCCTTTAGGAATTGATAATGATGTACCAAATAGCACTTCCACAAATACTGCATTCCCGCCACCACCAAACCAACAGCAGCAGCAGATTCCTGTTCTTGGCGGGATCTCAAGCAGTGATAAGGCAATGCTAGTAGAGCAAGCAACAAATGCCATGCAGGAACTTGTAGAGCTAACCAGACCAACAAGCCTGTACAGGATCAAGCCCATGTACGAAGACAAGGAAATTCTCTATCTTTTCAGTTATGGAAAGACTTCCAAAGGGATCGAGCATCGTTTGCATAACAATGATATTCATGTTGAGGCTTCAAGAGCTTCTGGCCTTGTGTGTATGAATTCTCTTTCTTTGGTTGTTGGTTTAATGGATCCGCTTAGCACTTTTCTATTTTCATCTCCTTTTTGTACTTATTACTCAATAGACTTtcattcaaaactttttttttcatattgTAGACCAAGTATGTGGGCCTATTTCATTCTGTTGTGGCTAAGGCAAATATTATTGATGCCATTTCTGTAGGAATGGGTGGAAATAATCACAATGGATCTTTATTGCTGGTATTTAAGTAGAAGTACTTCATTCTTAACATAATGGTTTCTGAGTTTTTAGgctaaaataatagaataatttgtCTATGCGGATGCATAGTGAAATTGGAATTCTTAGTCCATTCATCCTATCTCGCGAATATTACTTTGTTCGCTACTGCCAGAGGTTCAGTAATGGTTCTTGGTTTATAGCCGATGTGTCAGTTAATTTTCTAGGCTTTTTAGCAAAACATAGAAGGTTGCCTTCGGGTTGCATGATTGAAGAGACGCCTAATGGTCACTCTATGGTAACTCACACAAACACTGAAACACAAACGCTATGGTCACTCTATGGTCCTACATATAGAAGTCCTACATATATCATATGAAAAGGGaggaaaaagagggggggggggagggagggagggacCACTCACACAAACGCTGAAACACACGCATGCACAGAGACACACTCTTTGTGCAATTGTGTTGTTTGATGGTCGGTGTAGCTAAAGTTGTAAAACTGTCAGTTTCCAAAATAGATTTTGTGAGCGTTTGTCAATAGCATTTTAAGTAATGATTTagtattataatttgaattgtttgataatAGTTCAATCTTCTGATTTTGAAGTAAGAGGCAAAATGACAAGttgtaaataataaatactttTATTCATAACTCATCTATCCGATCACTTCAACTCTTACATTTCAAATGAAACTACTTGCtctaagaaaatttaaattttgttgttcccagttttttaattttatttaccttCTATATCATTCACAAACTCAATGTAGGTCACTTGGGTAGAGCATACAGAAGTAGAAGAAATCAATCATAATCTTGGTGTCTTCCACAATTATATTCGTAGCAGTACGACATTTGGAGCTCAGCACATGTTACCAACACTTCAAAGAATGACTGAGAGGTCTTATTACTTGTGGATGGTAGGGCCTCAAAGCTTAGATACTGGAGGAGgtacaaatttccaattacaattaCATTTGCATTATGTTTTTGTTGAGTTTACTTACAATTAATAGCATGATTTTCAGTTATTTTGACGCAAGATAGCAAAAGAAGCTTAATGTCTTTATCCCATAGCGTGGTGAGATCATTTTGTAGTAGCCTATTTCCTTCAAATGATTGGATTATTATCATGGACTCTAACGAGACCAAAATTCGAGCTCTTCCAAATCAAATCATAGATAACTTTGGGTCTGGTGGAATCGTTCTTAATCTCGTAACCTCTACATGGCTGCCTTTTTCTACTGAACGAATTTTCAGCTTCTTTAAGGATGAATCAAAAAGAGATTTGGTAATTAACATCTCTTGTGATTTCTTTTCCTCATTCTATTTAGAATGAATCATTATGGTATTCACAGTGTgtcttttcttttattcaattgtGGCAGTGGGATATTTTATCAATTGGAAGTATCATGCAGCCAGTCACAAACCTCTTCACTGGTTTTAATAGTGAAAATTGTATCTCGCTTCTATGGGTAAGTTTTCCTGTATTTCCTTCATGTTATTATTTCGTGTTTAAAACtaacacaaatcaagcatgcaatAGATGGTCTTCTAAGAAAATGTGGTGGTTTTACTTCTGCACCTTTGATCTTATGTAAGGATCTAGGAGCAAGATTGTTTCTATTAAGAATACTTTTCAGAGTATTGGCAGAAGGACAAAAATATGAAACAATAGCACTATAATTTTTCTAAACGCTGTTAAAATTTTATTCTACAATTGCAGCCTGGGACTTCAGACGGGAACCCGATACTACTGATGCAAGAGACAACGGTGGACTCATCAGTCTTAATGCTGGTATTCACATCAATTGACCATTCGATTATGCAGATTGTACTGAATGGAGGTGAAGCACGAAACATCCCTCTCTTTTCTTCGGGAGTTGCGATTTTACCGAGTTGTCCTTCATTGACGAGCAGACCTTCTAGTAGTTCAAATCCAGTAGTCGCTGGTTCATTCCAAACTCTGTCATTTCAAATTCTGTTGAACTGTCAGTCTACAGACGTGGATTTGGACACGTTAAACAGATGGTGTAGACTGATGCTAGATAAAATGAAGAATGTGAAGACTACATTGAACTCCCCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256822.1	1.1e-115	homeobox-leucine zipper protein ROC8-like isoform X1
Swissprot	Q9FX31.1	7.4e-88	Protein HOMEODOMAIN GLABROUS 11
trEMBL	A0A5P1FA69	8.1e-116	Homeobox-leucine zipper protein HDG11-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G73360.1	33.19	6e-98	355	AtEDT1;ATHDG11;EDT1;HDG11	homeodomain GLABROUS 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G04755	AT1G73360.1	696	406	15	17	670	38	716	33.19	6e-98	355
Asa4G04755	AT1G17920.1	686	392	18	17	670	27	684	34.11	2e-96	350
Asa4G04755	AT4G04890.1	662	388	19	17	642	68	709	32.93	1e-89	327

Ortholog group

Species	Genes
Allium cepa	g342037.t1; g342050.t1; g436788.t1; g436805.t1; g92394.t1
Allium fistulosum	AfisC1G04029; AfisC1G05844; AfisC5G01864
Allium sativum	Asa4G04746.1; Asa4G04748.1; Asa4G04750.1; Asa4G04752.1; Asa4G04755.1; Asa4G04756.1; Asa4G04757.1; Asa7G00687.1; Asa7G03531.1; Asa7G03533.1; Asa7G03536.1; Asa7G07700.1; Asa7G07701.1
Arabidopsis thaliana
Oryza sativa	LOC_Os07g47130.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	15	65	53.6	1.3e-14
PF01852.16	START	Domain	249	412	79.0	2.8e-22

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network