result

Gene information

Detail information of Asa4G04874

Location

Gene	Chr	Start	End	Strand
Asa4G04874	chr4	1331457785	1331459828	-

Sequences

CDS

>Asa4G04874.1
ATGGAGCCACCTGACTTGGGCATATCTATTAATCTGGCTATTTTAAAAATAATCCACAGTTCAATGCAAGAAGATGGTTCGTCGATCCAAGACCAGGAGCCGAAGATTAGAAAAATGGAAGAACAAATTAGAAATCTTGAGGAAGAAAGGAAAAAAGTCCAAGTCTTTGAACGCGATCTTCCTTTTTGCAAATTTCTTCTCAACGAGGCTATTAAAGGAATGAAGATCGAACTCGAGAAATGGAGAAGAAAAAATGTTAATGCGTTGGAAGAATCCATGCCTGCAAAAAGCAGCAAATCAGAAGAGGAAGAAAAGGTTTCAAAATTTGAAAACGATTGTAAGGATAAAATGAACTGGATGAGCTCGGTTCAGCTATGGAGCGACCAGTACAGCAGAATCAACGACGATGATAACAACAATAAGAGCACAGAGTCCAGAGTCAATACGATCAAAGCAGGATCAAAGAGGGACGCGATCACCTCCGATGTTGGGTTACCGGATCTGTCATTAGTTCCATATGCTGCTCCTGCATCAGCACCACCAGTTGCAACATGCCACGTGTTAGATCCTGATGGTGGCCGTGTCGGTGTTCATTCTCTGAAGCAGCAGCTACAGCAGGCTTCTAGAAAGGCCCGGAGGAGTTGGTCACCGGAACTTCATCGGAGATTTGTGGCTGCTCTTCAGGAACTTGGTGGTGCTCGAGTAGCAACACCAAAACAGATCAGAGAATTGATGAAGGTGGATGGATTAACAAACGATGAAGTTAAAAGTCATTTGCAGAAGTACAGGTTATACGCCAGAAGAGAATCAAGCGCTAGAAGTGAAGTAAATAAAGTAAATAACGGCGTCATGTTAATGGGAGGATTACTGGTCAAGAACCAACAAGTGTTTAGTAAAATGCAGCAAACTGAATCACCTCAAGGACCATTTCAGTTGACCTCTTCTTCTCGAGTAGTGACTTCTGTTACTAACAGCGATAGCTGTGACGACGATCGGAAGTCTGAAAGTTGTAGCTGGAATTGA

Protein

Gene

>Asa4G04874.1
ATGGAGCCACCTGACTTGGGCATATCTATTAAtctggctattttaaaaataatccacAGTTCAATGCAAGAAGATGGTTCGTCGATCCAAGACCAGGAGCCGAAGATTAGAAAAATGGAAGAACAAATTAGAAATCTTGAGGAAGAAAGGAAAAAAGTCCAAGTCTTTGAACGCGATCTTCCTTTTTGCAAATTTCTTCTCAACGAGGGTAATCGCAGTTTATCCTTTCATTCTACTTctaagcaagttttttttttcagattttttgtGGTAAGTTCTGAATTATGATTGCAGCTATTAAAGGAATGAAGATCGAACTCGAGAAATGGAGAAGAAAAAATGTTAATGCGTTGGAAGAATCCATGCCTGCAAAAAGCAGCAAATCAGAAGAGGAAGAAaaggtttcaaaatttgaaaacgaTTGTAAGGATAAAATGAACTGGATGAGCTCGGTTCAGCTATGGAGCGACCAGTACAGCAGAATCAACGACGATGATAACAACAATAAGGTCGAAACGTAGTTAACCTAAACTGAAATTGGAAACCTTTTGAAATAAGTTTGATGTTGCTGAAAGTGAGAATATTTTGAATACAGAGCACAGAGTCCAGAGTCAATACGATCAAAGCAGGATCAAAGAGGGACGCGATCACCTCCGATGTTGGGTTACCGGATCTGTCATTAGTTCCATATGCTGCTCCTGCATCAGCACCACCAGTTGCAACATGCCACGTGTTAGATCCTGATGGTGGCCGTGTCGGTGTTCATTCTCTGAAGCAGCAGCTACAGCAGGCTTCTAGAAAGGCCCGGAGGAGTTGGTCACCGGAACTTCATCGGAGATTTGTGGCTGCTCTTCAGGAACTTGGTGGTGCTCGAGGTATACATTTGAAACTCCGAGGATTAAGTAATTTAAATTGCCCAGTTTTGAATTAATACAAACAtgatatagaaaaaaaaaaaaaaaagttcagatttgatcattttgttaattaaaatgtgtGTCCTAAAGTTGGTATCGGAAGTTCATTGACAATATGCTTGATCGCTCTGGTATTTTATCTAGTACTTACGAATGTTTATGAATAGTTTTCAATTCTTGAGAAATATTAAGATTATTGCCTTTTGTGCTCACAAAGCCTTGTGTCATTCAACAATATACACATTTGCACATACACACGCACCTGTAAATTTATCATTGTAACAGTGTCTTTAAATCTGTATGCTAATTAAACGTCGGTTGCACTGTTTTTTGTAGGTTATAACTGTATTTTAGATAATTTTTCATGGAACTAGTCTTGAGTAAATTAGAAATTCAAAGTTAGTGGTTTGATCTGGTCTCTATCGAGCTCTTCAAGTTATAAAAGTGACTCATGTGCTTATATCCTTCTTTTTTGTTGTTCTATTGACTATTAACTGTAGTTTAGATAGTTCTTTATCCGGTTAATATAAATAGAGTTGATTAATTCTGTTCAGTTTTGGAGCATGCACACGAAAAAGCATCTATCCgagtgtttatgtgtgtgtgtgtgtgtatatatatatatatatataaaagaagaagcaattatcacatttaaaatttacAAACATATAAAATTCATTGCAATCTGCACTAAAACTTGTGTGAAAATATTTCCTATGCAGTAGCAACACCAAAACAGATCAGAGAATTGATGAAGGTGGATGGATTAACAAACGATGAAGTTAAAAGTCATTTGCAGGTAACCAAACAATCTCTAGTTAGCTTTAAATCAATTATATACGAGGATGATGACGGCGATGACGATGATTTTCATAATACAGAAGTACAGGTTATACGCCAGAAGAGAATCAAGCGCTAGAAGTgaagtaaataaagtaaataacggCGTCATGTTAATGGGAGGATTACTGGTCAAGAACCAACAAGTGTTTAGTAAAATGCAGCAAACTGAATCACCTCAAGGACCATTTCAGTTGACCTCTTCTTCTCGAGTAGTGACTTCTGTTACTAACAGCGATAGCTGTGACGACGATCGGAAGTCTGAAAGTTGTAGCTGGAATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	4.0e-61	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q9ZQ85.2	1.3e-24	Protein HRS1 HOMOLOG 4
trEMBL	A0A8B7C640	4.2e-52	myb family transcription factor EFM

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03500.1	35.53	2e-39	159		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G04874	AT2G03500.1	304	132	8	33	291	30	314	35.53	2e-39	159
Asa4G04874	AT4G37180.1	325	167	10	6	310	10	306	33.85	3e-36	149
Asa4G04874	AT1G25550.1	318	150	12	31	307	10	313	35.53	2e-35	147

Ortholog group

Species	Genes
Allium cepa	g204987.t1; g331402.t1
Allium fistulosum	AfisC2G01545; AfisC2G09123; AfisC3G08109; AfisC5G02337; AfisC5G04855; AfisC5G06640; AfisC7G03520; AfisC7G04429; AfisC7G04434; AfisC8G01543; AfisC8G01589; AfisC8G04893
Allium sativum	Asa1G00890.1; Asa4G04874.1; Asa4G04879.1; Asa6G06490.1
Arabidopsis thaliana	AT1G49560.1
Oryza sativa	LOC_Os03g55590.1; LOC_Os07g02800.2; LOC_Os07g02800.3; LOC_Os07g02800.4; LOC_Os12g39640.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	212	263	31.0	1.9e-07

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14491	ARR-B; two-component response regulator ARR-B family	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network