Detail information of Asa4G04920


Location
GeneChrStartEndStrand
Asa4G04920chr413404036931340414082+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010906636.11.0e-97homeobox protein HOX1A isoform X3
SwissprotP46605.16.4e-97Homeobox protein HOX1A
trEMBLA0A6I9QBK37.3e-98homeobox protein HOX1A isoform X3

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G19510.140.112e-87 320HAT3.1Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag163548.t1
Allium fistulosumAfisC5G06592
Allium sativumAsa4G04920.1
Arabidopsis thalianaAT3G19510.1
Oryza sativaLOC_Os06g12400.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain34840342.15.3e-11
PF00046.26HomeoboxDomain69273944.01.3e-11

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0008270Fzinc ion binding
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11657RSF1; remodeling and spacing factor 1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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