result

Gene information

Detail information of Asa4G05196

Location

Gene	Chr	Start	End	Strand
Asa4G05196	chr4	1416683663	1416685301	-

Sequences

CDS

Protein

Gene

>Asa4G05196.1
ATGGACATGATGCTTGTGAAAAGCGAAATGCTGAATGAAAACAGGAGGAGAGTTCTTGGAGTGACTGCTGCAGCTTCTAGTGAAGTGAAACATATTAAGAGGCGGAGAAGAGAGCCTGCATTGCTTGCTGTGGTAACAGCAGGCAGTAAAAAAGATGGAACGATGGAGCAGACAACTGGTACCACCATTAAACGGAGCTCTAAGTTTCGGGGTGTTAGCAGGTAATTAATTAGTCTACAAATATATTTCTTCAAGTAAATAGATGGATATCCACATTTAACACATATGATTAATATCAGGCATCGATGGACTGGTCGATATGAAGCACATTTATGGGACAAAGGTTCATGGAATGCAACacaaaggaaaaaaggaaaacaaGGTATATTCTCAATTCTATCACTAAACTCAATGTAAGATACAATGCAGAAATTAATGAGAAGTACATATTGCATTTTTAGTTTATCTTGGTGCATATGATGTGGAAGAATCAGCTGCTAGAGCTTATGACCTTGCTGCTCTCAAGTATTGGGGACCTACCACCTTCACAAACTTCCCTGTATGTAGTTTAGTTTACTTCGACTTTGCTTAACTACATGATTTTAAAAGCTAAATTCTTTCAGGTGGCAGACTAtgagaaggaaattgaaataaTGCAAACTGTTACGAAAGAAGAGTACCTAGCCTCCTTGAGAAGGcatgattgattatttattattaccTGTTAACAACTGAACATTTTTCAAGCACTTACAACTTTTGCTTTTGCTTGATTCTTGTATCCTTCAAGGTTTGAACATGAAATATTCATCATCTGTTTTCTGTTACAGGAAGAGCAGCGGCTTCTCAAGAGGAGTATCAAAGTATAGAGGAGTTGCAAGGTCActgttaataaaaattatttttaaattctttttactGGATGATTTTTACTGAAAAGAAAAATTGTTATGAATTTGATGACATAGGCATCATCATAATGGAAGATGGGAAGCAAGAATAGGACGAGTTTTTGGGAACAAATATCTCTACCTTGGAACATACAGTAAGCAAGCTAGCCAAACAAAGGACATATTGCAGAATTTTTATTTatctcaaatttaaatgaatattcgaaCCAGGTACTCAGGAAGAAGCTGCACATGCATATGACATAGCAGCAATAGAGTACAGAGGAATCAATGCAGTGACCAACTTCGACTTGAGCACATACATAAGATGGCTAAGACCTGGATCTACAACCAACAATATAAACATAAACTTACAAGAGCAGAACAAGAACGGTGGCCTACAGTTTCAGACTACCCTACAACCATCCAGTCATTTCCTTACAAACCTAGACACTCAAGTACCGCCACCAACACAAAGAACGTTCCAGTTAGAAGAGTTGCAAGTGCCATGCAAGCAAGAGTTTGTTTCTCTTCAATCTCAAGCCAGCAAGTCATCTCCTACTGCTCTAAGTATTCTGCTTAGGTCCTCTGTGTTTCAACAGCTAGTTGAGAAGAATTCTAATGCTGAGGAAGAGGAAGAGAACGACAATGGATTGATGTATGAAGGGATAGAGATCGAAGAGAGTGATAATGCGTATTATGAGAAGAACGATGGTGGTATCTGGAATGGTGTTATGGGCATTCAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242611.1	1.2e-119	LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor At1g79700
Swissprot	Q6X5Y6.1	3.0e-78	Protein WRINKLED 1
trEMBL	A0A8B7CZZ6	1.4e-109	AP2-like ethylene-responsive transcription factor At1g16060

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54320.1	76.88	1e-78	290	ASML1;ATWRI1;WRI;WRI1	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G05196	AT3G54320.3	186	43	0	52	237	49	234	76.88	1e-78	290
Asa4G05196	AT3G54320.1	186	43	0	52	237	49	234	76.88	1e-78	290
Asa4G05196	AT5G57390.1	207	70	2	26	232	167	367	63.29	2e-73	273

Ortholog group

Species	Genes
Allium cepa	g127636.t1; g22438.t1; g46163.t1
Allium fistulosum	AfisC2G02040; AfisC2G02046; AfisC4G00860; AfisC5G06269
Allium sativum	Asa4G00677.1; Asa4G05189.1; Asa4G05196.1
Arabidopsis thaliana	AT1G16060.2; AT1G79700.2
Oryza sativa	LOC_Os06g05340.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	67	126	47.2	1.8e-12
PF00847.17	AP2	Domain	169	220	44.6	1.1e-11

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network