result

Gene information

Detail information of Asa4G05598

Location

Gene	Chr	Start	End	Strand
Asa4G05598	chr4	1526579101	1526580686	+

Sequences

CDS

Protein

Gene

>Asa4G05598.1
ATGGACCAAGAAATGCAGGACTCACTTTTTCACCCATTCATGGTTCCGCAATACAGCTCCGAATACTCGATCTTCTCTCCCAAAAAGTTGGCTCCGATTTCCCCATTTTCCCCTGCTTCATCCATCAGCACCCCATCGGATGACTACTTCTCTGCCACGTCAGATCGCCTTTATCTTGCTGGACTCCGCCTGCAACATCAGGATTTCTCCAACCGCTATGACCTCTGCCTTTCCCATCTCCAAGATGCCGCCAGGCAGGCTGAGCTTCTCCGCCTGGAGAATGCACAGTTAAGGATCCGAAATGGACAGCTTAGCAAGAGGATCAGTAGTGTAAGTGGGACTGCAAGAATTGACTCCTTGGAAAATGAGATGAGGAAGCTGATGATTCAGAGGGAGAAGGTAATGGAGATGTTGCCCCCTGTCGCTGTTAATAGTTTGCCAAAGAGTATTGCCGTTAGATCAAATGGCTATAAGAATATGAAAGGTGGTAACGGCAGCGGATCCGGTCGGGATGGGAAAGTGCGGGTTTCTAAACCCACTCTTGGATCGGTGAGTTTTCGTGTTCCGTTTTCTTGTTAGGGTATGTTGACGCTACTTGTATTGGATTCATTAAACCTCTTGATTATCTTACAGTATGGCATGATATGATTATTCCTAGCCTTGATATTGAGCATTAAACAATAGTTCGTGATTAGATTACTTTctttgttttaaatgatttgattatagaatttttGTAATGTGTTTGGATTGAAACGAAGATCGATTGTTTTAACTTAGTAACAATGAAGGCCTCATCTGAGCAAATATTCCCATCAGTAAATAAACTCAACAGAACAGCATGTGATCCGTTGTAAGAATAGTTTCATGAATCATGCCATCATTATTTCAAATGTTAACATGATTCCGTAGTTAACTAAAATTTTAGTTCGTAATTGCTTGGTTGGGTACATGTTTTGGTATTCTTGAGCATCTGGACTACTCAACTCGGGAACACGATTGGGTTTTTCTCGTTCTTGATAATTGAGCATTAAAGctatcaataaccaaatcaattcaaCGGATAACTTGTAACGTTTTCATACTCCGATAGACATCAATCGTATATGCTCGGACGAGTATAATTCGTTGAAGTGTAAACTTGAATCTCCGATTGCCTTCAGCATTTTAATTGATTAAAAGCCATCATATTCTGACATTTTATGATGTAAATGCAATGGCAGCAGCAGCGTGTGTACGTGGCAGGTGGTAGTGAAGAGCAGGAGCAGCCACAGCAGCGTAAGGGACAGCAGACAGCCCAAAGCTCAGAAGAAAGGGCCTTAGAATTGGAAGTGTACAACCAAGGCATGTTCAAGACAGAGCTATGCAACAAGTGGCAGGAGACAGGGGAGTGCCCTTACGGGGAACACTGCCAGTTTGCTCATGGGCTTGACGAGCTCCGCCCAGTGATCCGTCACCCACGCTACAAGACTGAGGTCTGCCGCATGGTTTTAGCTGGAGACAGATGTCTTTATGGACACCGCTGCCATTTCCGCCATGCCCTTACCCCTTCTGAAATGCTACTCATGCAGTCACCCCGGAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010924174.1	2.4e-41	zinc finger CCCH domain-containing protein 9
Swissprot	Q6L5G1.1	1.5e-40	Zinc finger CCCH domain-containing protein 39
trEMBL	A0A8B9ALN5	2.2e-44	zinc finger CCCH domain-containing protein 9-like isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68200.1	45.20	8e-53	204		Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G05598	AT1G68200.1	281	101	7	54	297	30	294	45.20	8e-53	204
Asa4G05598	AT1G68200.2	280	99	8	54	297	30	293	46.07	2e-52	202
Asa4G05598	AT1G66810.1	252	115	5	51	298	74	305	44.84	5e-47	184

Ortholog group

Species	Genes
Allium cepa	g109152.t1
Allium fistulosum	AfisC5G05867
Allium sativum	Asa4G05598.1; Asa4G05603.1; Asa6G06565.1
Arabidopsis thaliana	AT1G68200.1; AT1G68200.2
Oryza sativa	LOC_Os01g45730.1; LOC_Os05g50080.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	226	251	44.4	9.5e-12

Gene Ontology

Accession	Ontology	Name
GO:0046872	F	metal ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K18753	ZFP36L; butyrate response factor	EC:-	Cellular senescence	ko04218

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network