result

Gene information

Detail information of Asa4G06183

Location

Gene	Chr	Start	End	Strand
Asa4G06183	chr4	1698934952	1698937331	-

Sequences

CDS

Protein

Gene

>Asa4G06183.1
ATGGAAGCACAACAGAACTACTATTACTACAATAACATGTATGATAATCCAATTGAAGACGAGTGTAGGGTAGTTTTACACAATGATGATGAAGAAGAAAATGGATGTGGCCACTACAGAGAAAATGGGAAAGGCCTATCTCTTACACTTGGTAATTCATCGGGTCTCCTTGATCccaatcatcaatatcattttcAAACCAGTGATAATGACCATAGAAATAGCTCAAGGTCCAAGCCAGTTAATCATAATGATCACTCATGTGCACAAAGCTGTTGTAATCATCTTCTTCCTACGGCATTGGTAAGTCAGCTGCTTCGCAGTTGTCGGTATATGAAAGCAGCTCAGCAGTTGCTGGATGAAGTGATTTGTGTAAGCAATGCAGCTGAGTTTGTTTATGAGCATCCTTTTAAACAAGCTTCTGCTTTTCAAAGCAACAATACTGCTACTGCTACTGCTACTTATCATCCTTCTAAGTGTGCATTGAATGATTTGGATAAGGAGGAAGAAAGCAGCATACACATCAATGATGCAGAAGCAACAGCTGCTGCTTGTACAAACTTTGCACATGATAACCACCATCATCTTCCTGTCCTGGTGTCCAAACTGGTTGCCCTATTACATCAGGTATATATTTCTGTATGTTTATTTGTAGAGGAAGGTTCAATAGCACCTCTATTCTGGAGCATCATTTTAGCATCCTTATCGTATTTTGAACCAtagttcaaaacaagattttcaaaatgGGTTTCAAATTGCAAATCGTAAAGTTTAAACTTTGAATACATGATTTGAATCGTAAATTGTAGATTCAGAATATTGGTATTTTTAGATTTGTACGCACTTTGTacttgattttgatgttcgatctTTTATGTCTGCATTCAAAACTCAATCCCTgtcttatattattttatttaaatttggaattgtggATTCAAATAcgcttattaaatttataaatatagtttgaGTGACCTGTCTCAATTGCTGCTTTATAACCAGACTTCAATCAGAATGGAAGTTGAATCGTAAAGGTAGATATTCCATTTGAAACAAGATCTAAGTTGTATGATTCTAAGAATTTTTGGACAACAATAAAATGGTACATAATTTTGTAGAAATATAaatacattatgaatatcatatgaTATTTGAATGTAGCTCAAAATATGGTAAAGTATTTCAAGAGAGAGATGCCATTGAAACTTCCTTTTATATGCATATTATTGACCCCAATAAATAGTTTGTTGAACGATGTGGTCATTATTTCCTTGTAGCTAGAGAGGCGATATGAGAAATACTTGTGCGAAATGGAAACGGTGGTGTCATCATTTGAAGCAGTAGCTGGAGTAGGAGCAGCTTCTTCTTATACAACACTGACGATCCAAGCGATGTCCAAACATTTCTCAAACTTAAGACATGCCATTATTACTCAGATTAACAGTTCTTCCTCAACTTCAAAGCTTCAACACCTAAAACATAAACGAAATGATACACTATTTCAGCCTCAAGCTGGCTTCATGAGCAATAGTACTAGAACACCACAATTATGGAGAGCAGTAAGAGGATTGCCAGAAGATTCGGTCTCTAAACTTCGAGCATGGCTTTTCCACCACTTTCTTCACCCGTATGATCCTTTCCTTCTTATTGCCTACTTATCATCTTTCTTCTTAAATTTTCATGTCAATAGTTCATACATGCCTTATACTGATCCAAAGCATGTTTGACAATTTCTTACGagtaatctaaacaatttattagTAGCTTGGCAAACATCTTGTCCAAACTGATTAGGACATTTGATCATGGTGCAAGAGGTCACGAGTTTGATGTTGCATGCTTATAAGGAGGCATCATAATTagctttgaatttatttatttatcgaaaaaTACACTATTTCTTGCTCAAAAAATGTGTTATTTGAACTTtcgtttcaaattttcaaactgtaatTCTTTTTACCTATAAATCAAAACgtttatcaaattaattttttaattttcttcttctaGACGAAAACTGACTTCTGGAAAAGTAAATGACATATACTCTTTGTTTGCCAAATCCTAAAGGGCGCCTACGTAGGCATACTAACTAATGTTGTAACTAACAGCTACCCAAGCGACGAAGAGAAACTGACACTTGCTTCGCAAACTGGCTTAACCCGAAAccaggtaaattttattttattttctaattttttttggttACATATATGAATTGATTAGCTTTCATCCTTTGATGTTAACACATGATTATAATTGTTGTTTCAATTATTATCTACAGATATCAAATTGGTTCATAAATGCTCGTGTTCGACTGTGGAAGCCTATGATTGAAGATATGTACAAAGAAGAGTTTGGTGAAAGTATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK67388.1	7.3e-64	uncharacterized protein A4U43_C06F19650
Swissprot	Q1PFD1.1	1.9e-48	BEL1-like homeodomain protein 11
trEMBL	A0A5P1EN06	5.3e-64	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G34610.1	35.98	1e-55	214	BLH6	BEL1-like homeodomain 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa4G06183	AT4G34610.2	353	162	7	35	373	85	387	35.98	1e-55	214
Asa4G06183	AT4G34610.1	353	162	7	35	373	85	387	35.98	1e-55	214
Asa4G06183	AT1G75410.2	375	167	8	43	374	78	420	35.47	5e-53	205

Ortholog group

Species	Genes
Allium cepa	g94161.t1
Allium fistulosum	AfisC1G08044; AfisC2G07526; AfisC4G03830; AfisC5G07047; AfisC7G04367; AfisC8G01765
Allium sativum	Asa4G06183.1
Arabidopsis thaliana	AT1G75430.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07526.8	POX	Domain	106	259	107.2	8.6e-31
PF05920.8	Homeobox_KN	Family	318	357	65.7	2.3e-18

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16670	MEIS2; homeobox protein Meis2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network