result

Gene information

Detail information of Asa5G00377

Location

Gene	Chr	Start	End	Strand
Asa5G00377	chr5	94297552	94299638	-

Sequences

CDS

>Asa5G00377.1
ATGCAGTCCGGATACGGGGAAATGCATCGTCAGTACATCGTGGACCACAACTGCCCCTCCTCCCTTTTCTCCTCCTCTGCTCCCTCCGACCATCTTCCACCGAACAATGCCACATCGTCCTCCCAAGATATCCACCACAAGTACCGCCACCCCCTTCCGCATCCGACACATCCAACGCCTCATTTCGTGCAATTTGGGCATCCCGTCCCCATCACTCAGCAGCTGTTTCACCACCAGCAGCTGACTCATCACCAGCATCAGTTTCAGCTGTACCAGCACCAGCAGCAGCACCAGCACCAGCATCAGATGAGTTTAGATCAGGAATCCGAACCCGATAACACGAGCTCTCCTGCCGCCTCCGGTCCTGCGTCGTTCCTTGCTGCCATGAATTTCAAATTAGGTCTCAGCGAGAGCAGCGGCGGCGGCGGGACTAGCAGGGACGATGATGGTATTTTGCAAGGCGGCGGAGGCGGCGATGACGGTGGATCCCGCCATCATGGTCATCTTCTTTCATGGAATGCCGATGTTGATTCTAATCAGGCTCACAGCCTAAAGCAGCCCTTTTGGAGGCCGCTGGATATAGACTACATTACCACCAGCGACAAGAGGCAATCAAAAGACAAGCAGCAGATAGACATAAACCCGGATCCAAATCCAAATCCGAAACATTTCAAGAAGAACACCGAAGTTCTAATCGACCATGAAGGCAACTACAAACTTTTTAGTGAGCTTGAAGCCATTTACAAACCAGGAGGAATACCCAACATCAACGACTGTGTCAGCGCAGATGGTGGCGTCTTGATCAACTGCAACAATCAAACTGGGTCGGGTTCAGCCTTAACAGGTGACGAACATCCACTACTCCCTGCATCGGCTCCTGAAGAACCCACCATGGAAGATGATACCATTTCAGATACTTCCAATAATGAAGAGGCAATGCCACAAAATACAGAAGCAGAAGATATGAAAGTTCAGAAAAGAACTGCTAGCAGTAGTAATGCTAGTAGAAGAGCTAGGATTAAAAGAAGGCAGCAGAAGGAACTCGCTTCAATGGCATCATTTTTTGAAACTCTCGTGAAACAGTTAATGGACCAAGAAGAAAGCTTTCATTGTAAATTTTTAGAACTCATGGAGAGGAAGGATCATGAAAGGAGTGTTAGAGAAGAGGCATGGAGGAAGCAGGAAACAGCAAGGGCGGATAAAGAGGCTGCTGCTAGAGCCCAAGAGCGTCAGCTGGCAGCTTCTCGGGAGTCTGCCATTGTTACTTTTTTGGAGAAGATAACCGGAGAGAGCTTGAAGTTGCCTTCTAAGAATGTTTGTCTGGATAAACAAATTGTTGAATATGACAGTAATAGTATGGGAGTTCAGCAGAATAGTGGTAGGTGGCCGAAGGCTGAGGTTGAGGCATTGATACGGGTGCGAAGCGGGTATGAAAACCGGTTCCAAGAACCAGGTTTGAAAGGGCAGTTATGGGAGGAGGTGAGTTTAGCAATGGGAGGATTAGGGTATCAAAGAAGTGCAAAAAGGTGCAAAGAGAAATGGGAAAATATCAACAAGTATTTTAGGAAGACAAAGGAGAGTGGGAAAAAGAGGCCAAGGCATTCGAAGACTTGTCCTTATTTTCAGCAACTGGATCAACTTTACTCGGGTTCGAAGGCCATTGATAACGTAGGTGGGAATGGAGAAAGGAAGGATGATTCAGAGTTGCTTGATGCGATTGTTGTAGTAAATGACTGCGAAATGAAAAGGGGTGCTGAGTTTGGCGAGGATGGTAAGGAAGTAGATAACAATGAAGATGAAGAGGAAGGAGAAGATGAAAGCCAAGGACATGGAGAAGATTGTGATGATGTTAACAAGACTAAACACGGTGATGCTGTTCTTGCTTGA

Protein

Gene

>Asa5G00377.1
ATGCAGTCCGGATACGGGGAAATGCATCGTCAGTACATCGTGGACCACAACTGCCCCTCCTCCCTTTTCTCCTCCTCTGCTCCCTCCGACCATCTTCCACCGAACAATGCCACATCGTCCTCCCAAGATATCCACCACAAGTACCGCCACCCCCTTCCGCATccgacacatccaacgcctcatttcGTGCAATTTGGGCATCCCGTCCCCATCACTCAGCAGCTGTTTCACCACCAGCAGCTGACTCATCACCAGCATCAGTTTCAGCTGTACCAGCACCAGCAGCAGCACCAGCACCAGCATCAGATGAGTTTAGATCAGGAATCCGAACCCGATAACACGAGCTCTCCTGCCGCCTCCGGTCCTGCGTCGTTCCTTGCTGCCATGAATTTCAAATTAGGTCTCAGCGAGAGCAGCGGCGGCGGCGGGACTAGCAGGGACGATGATGGTATTTTGCAAGGCGGCGGAGGCGGCGATGACGGTGGATCCCGCCATCATGGTCATCTTCTTTCATGGAATGCCGATGTTGATTCTAATCAGGCTCACAGCCTAAAGCAGCCCTTTTGGTTAGtagtaaattatttgttttacccAAAATTTAGTTTTTCATCAGTCTGCTCCTGTCTATTTTTACTAAAGTTTTGCCCAGATATAAATTTTGTAGCTTTAATTTGATGtggatatttttaaattgaattagctactttttgaatttttttttctttaggaattAATTTATCCAAAAAGATTGCTATTAATAATGCAGGAGGCCGCTGGATATAGACTACATTACCACCAGcgacaagaggcaatcaaaagacaaGCAGCAGATAGACATAAACCCGGATCCAAATCCAAATCCGAAACATTTCAAGAAGAACACCGAAGTTCTAATCGACCATGAAGGCAACTACAAACTTTTTAGTGAGCTTGAAGCCATTTACAAACCAGGAGGAATACCCAACATCAACGACTGTGTCAGCGCAGATGGTGGCGTCTTGATCAACTGCAACAATCAAACTGGGTCGGGTTCAGCCTTAACAGGTGACGAACATCCACTACTCCCTGCATCGGCTCCTGAAGAACCCACCATGGAAGATGATACCATTTCAGATACTTCCAATAATGAAGAGGCAATGCCACAAAATACAGAAGCAGAAGATATGAAAGTTCAGAAAAGAACTGCTAGCAGTAGTAATGCTAGTAGAAGAGCTAGGATTAAAAGAAGGCAGCAGAAGGAACTCGCTTCAATGGCATCATTTTTTGAAACTCTCGTGAAACAGTTAATGGACCAAGAAGAAAGCTTTCATTGTAAATTTTTAGAACTCATGGAGAGGAAGGATCATGAAAGGAGTGTTAGAGAAGAGGCATGGAGGAAGCAGGAAACAGCAAGGGCGGATAAAGAGGCTGCTGCTAGAGCCCAAGAGCGTCAGCTGGCAGCTTCTCGGGAGTCTGCCATTGTTACTTTTTTGGAGAAGATAACCGGAGAGAGCTTGAAGTTGCCTTCTAAGAATGTTTGTCTGGATAAACAAATTGTTGAATATGACAGTAATAGTATGGGAGTTCAGCAGAATAGTGGTAGGTGGCCGAAGGCTGAGGTTGAGGCATTGATACGGGTGCGAAGCGGGTATGAAAACCGGTTCCAAGAACCAGGTTTGAAAGGGCAGTTATGGGAGGAGGTGAGTTTAGCAATGGGAGGATTAGGGTATCAAAGAAGTGCAAAAAGGTGCAAAGAGAAATGGGAAAATATCAACAAGTATTTTAGGAAGACAAAGGAGAGTGGGAAAAAGAGGCCAAGGCATTCGAAGACTTGTCCTTATTTTCAGCAACTGGATCAACTTTACTCGGGTTCGAAGGCCATTGATAACGTAGGTGGGAATGGAGAAAGGAAGGATGATTCAGAGTTGCTTGATGCGATTGTTGTAGTAAATGACTGCGAAATGAAAAGGGGTGCTGAGTTTGGCGAGGATGGTAAGGAAGTAGATAACaatgaagatgaagaggaaggagaagaTGAAAGCCAAGGACATGGAGAAGATTGTGATGATGTTAACAAGACTAAACACGGTGATGCTGTTCTTGCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PKA50131.1	2.4e-75	Trihelix transcription factor GT-2
Swissprot	Q39117.1	1.3e-41	Trihelix DNA-binding protein GT-2
trEMBL	A0A8J5HJ81	1.7e-75	Myb-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76890.2	47.48	4e-50	196	AT-GT2;GT2	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa5G00377	AT1G76890.2	238	91	5	338	548	254	484	47.48	4e-50	196
Asa5G00377	AT5G28300.1	262	109	3	348	549	296	557	35.50	4e-39	160
Asa5G00377	AT5G47660.1	234	123	6	336	548	163	388	35.04	1e-33	141

Ortholog group

Species	Genes
Allium cepa	g415780.t1
Allium fistulosum	AfisC2G01009
Allium sativum	Asa3G01037.1; Asa5G00377.1; Asa6G04766.1; Asa6G05790.1; Asa7G03385.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g01380.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	461	547	79.1	2.3e-22

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network