result

Gene information

Detail information of Asa5G00990

Location

Gene	Chr	Start	End	Strand
Asa5G00990	chr5	221359530	221363137	-

Sequences

CDS

Protein

Gene

>Asa5G00990.1
ATGGAGATCAAGTCATCGTTAGACCCAACTGGCAAAATTCTATTCTCATGGCATATTGACGGAGATCAATGTAGTGGAAAATTTGATGGAGTCGCATGCAATGGTCATGGAAAAGTTGCAAATATTTCGTTGCAAGGAAAAGGTCTCGCTGGTCGTTTATCTCCTGCTATTTCTAAACTCAAATGCTTATCTGGGCTTTACCTTCATTACAATCAGATCAAAGGAGGAATACCAAAAGAAATTGCAAACTTGACTGAGTTGGTTGACTTGTATTTGAATGTTAACAGTTTGTCAGGAAGCATTCCATCTGAATTTGGAAACATGGATAGCCTTCAGGGTATgattttgttattttgttcatgtGATTTCTGCTTGTTTCAGTTGTTTATAAcagtaaagtttggatttttatgtatGTTACTGTGCATTTTTTTCGTGTAATTGATCTGTTGTACCTCAGCTGCTGAATTATAACTTGTATTTACTGGTTTTTAGCATTTTGTgaatattaaaatggtttgaacttAAAAAAAAAGTTCAAATCTTGCTATGTGAAacttttaaagatttcaactttatgACTGATTCTGTGTGGctactttcttttatttatttattttattttatttttttattttttatttttcaggaTATGTAAtcattctatatatttataaactgtAGTATAATGTATTTTTGCCTTGTATACAGTTCTTCAGCTTTGCTACAATCAGCTTACTGGAAGCATACCAACCCAACTTGGCCTTCTAAAAAATTTAAGTGTTCTGGCTTTGCAATCAAACAATCTTCATGGAGCTATACCTGCAAGTTTAGGGGATTTAACTCAACTAACAAGACTAGATTTGAGTTTCAACAAGCTCTTTGGTTCAATTCCTACAAAGATAGCTGAACTTCCTCAGCTTCAAGTATTAGATCTTCGGAATAATTCTCTTTCTGGCAATGTTCCTTCAGGTAAAACCATTTATTTGCTgttttcatacatataataaaactcTTCTATTACCTTATTCGTTGTATTTTCTTCAAATTTGCTGATACACAAAGACCTTGCTATTTTTCACTTGGTAactatttgtctatttattttaatactgtGCATAAAGTTATCATATCTTAGAGTGTGTTTGATAATAACTCataaaaagtagaaaaaaaataaaaaaaagagtaaaaagaaAGTAGCTTATGGGTTACTTTTGTAATTTGAAGCGGTTgacaaaaacataattttttgaatcaaaagaAACACTGATAagctggaagaaaaaaaaaaattgtttatggcTTAACTTAAAATTTTCTGACTACGTTTGGTCATAATTTCAACTTGTCTAACCAAACACTTGTATTATTAATATTTACCCGTTACTCAAAATTACAAAGTTACAACTCAGAACTCCTTTTAAGGAAATTCAAATATCTGAAAATAATGGGATTTGTTTGCCTTGTAGAACTTAAGCGACTAAACGAAGGATTCCAATTTGGCAACAATACTAATCTATGTGGGGTAGAATTCTCTTCCCTTCGTACATGTACAACATCAGATTTCTTAAGCTCGAACAGGCCCGAACCAACCAACCATGACCCAAAAGTTTCAAGCCCTGACTACCAAATTCCTCTAGAAATTCCTAAATCAGCCAATGTCACTACTGCACATTGCAGCACCACAAActgttccagtaactcaaaatccTCTACCCTAATCATCACTGTAGGGGTCATCGCAGTTTTAGTTTCAGGTGGTATTTCAGGCCTATTATCCTTCGCATGGTACCGCCGTAAAAAGCAAAAGATCGGCAATGGCAGCTCTCAAGATACAGTGGATAACCACCGCTTAAGCATCGATCGCTCAAAGGATCTTCCATTAAAACCTGCTTCTCCACTCATTAGTATCGAATACTCTAATGGGTGGGACCCGTTAGCCTCTCTTGAGGCTACACAAAGCTTTACGTACAATGTGGAGGAGGTGGAGAGTGCTACTCAATACTTTTCGGAGGTTAACTTGCTTGGAAAGAGCGGCTTTGCAAGTACTTATAAAGGGCGGTTGAGGGATGGTAGTGAGGTTGCAGTTAAGAGTATTAGCAAGTCGAGTTGCAAATCGGAAGAGGTGGATTTTTTGAAAGGTCTGAAATTGTTAACGGTCATTAGGCATGAAAATGTGGTGGGATTGAAAGGCTTTTGTTGTTCGAGGGGAAGAGGAGAATGCTATCTTGTTTATGATTTCGTTGCTAACGGGAGCTTGTTGCATTATTTGGATGTGAAGGGTACTGATGTGAGTAAGGTGCTTGATTGGCCCGTTAGGGTTTCGATCATCAAGGGCATTGCGAAAGGTATCAAAACTTCAAGTTTTCTGAATTTTGGAACTTTCTCTAAAAATTTAAGTATCAATTTTATGCATGTATTGTAAACCGTTCATGAGTATGTGCGGTACAGCAACACATAACATTACATGGATCAAGGGTGTTATGCATGTGCCCTTTAACTGTTCAAACTCATTTTCTTGACTATTCATCACTAGTAATTATGATATAATATGGTTGTTTTGTTtaaaagtttgaattcgattttggcATATACATCAGTCgagttaaaattattttttaatgtttaagCACCAAACTGGGCCAGTCATTGTCTTTAGTTTTTTACCACAAATTTATCAAGAAAAATTGACTGCTAGTTTCAAACAATTAGAATTGATTCTCATTCTTGCTGAATCTGAAATGATTTATGTATATTCTTCATAAAGTCGTTGAggatatatatttgattttggCATACATCCACTTGAGTCAAATGTCCATGTGCTTGTGGTTTTTgacttttcttatttcatttttcagctttGATGTTCAACCAACTGGCATATGAATACAATTTGAAGAGTCAATGTCCACTGATAAGTGCTTAAAGTCATTATACAATGATCACAATAAGTGATATTTacctaattataattatttaacagTACACAAATTTTTTAGTGCTTCTTTAAACTTTTAACGCTTATTATGCCATAGAAAACATCCAATAAGCGTAATTCTGGTTGAAAACAAGCACGCTTAAAGCTAATCAACATTCGtcaaatagagtttaaatatttcCAAACTTTTCTTTCAGGTATCAATTATTTACACGAAAACAGAACTCACAAACCACCTCTAGTCCACCAAAACCTATCCTCTGAAAAAATACTCATTGACCAAAACTTTGCCCCTAAAATATCCGGGCCTGGCCTGAACAAGCTCTTAGCAGATGATGTAGTTTTCTCATCTTTAAAAGGAAGTGCAGCAATGGGTTATTTAGCTCCTGAATACACTACTACTGGAAGATTCACTGATAAAAGCGATGTGTACGCATTTGGAGTCATCATGTTCCAAATTCTCACAGGCAAAACTCGTGTCACGCACATGAGACAAAGTGCTGAATCCGGCAAGCTCGAAGACCTCGTTGATGAAAACCTTAATGGGAAGTACAACAAGTTAGAAGCTGCTAGAGTTGCAAGTGTTGCATTGGTTTGTACTAGTGAAGTTCCCAGTCAGAGGCCTCGAATGGAGGCTGTGGTTAAGGAGTTAAGCATCTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273743.1	3.8e-169	LRR receptor-like serine/threonine-protein kinase GSO2
Swissprot	Q9LK03.3	6.5e-49	Somatic embryogenesis receptor kinase-like protein
trEMBL	A0A1D1Z4P6	1.1e-162	Protein NSP-INTERACTING KINASE 2 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G51560.1	55.35	0.0	714		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
Asa5G00990	AT5G51560.1	654	266	10	1	644	36	673	55.35	714
Asa5G00990	AT2G45340.1	666	260	13	1	645	31	685	56.16	713
Asa5G00990	AT4G22730.1	661	291	9	1	645	32	683	52.19	678

Ortholog group

Species	Genes
Allium cepa	g407021.t1; g485068.t1
Allium fistulosum	AfisC2G01237; AfisC2G05770
Allium sativum	Asa5G00985.1; Asa5G00990.1; Asa6G03134.1
Arabidopsis thaliana	AT5G51560.1
Oryza sativa	LOC_Os01g39600.1; LOC_Os06g04370.1; LOC_Os08g02440.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13855.3	LRR_8	Repeat	134	193	34.0	1.6e-08
PF07714.14	Pkinase_Tyr	Domain	383	644	138.9	1.6e-40

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04730	IRAK1; interleukin-1 receptor-associated kinase 1	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network