Detail information of Asa5G01500


Location
GeneChrStartEndStrand
Asa5G01500chr5371480447371482392+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrTQD86957.12.1e-25hypothetical protein C1H46_027471
SwissprotQ25AM2.11.1e-26WUSCHEL-related homeobox 4
trEMBLA0A835FKH31.5e-25Homeobox domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G46480.178.799e-27 114WOX4WUSCHEL related homeobox 4

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag202184.t1; g460302.t1; g497240.t1; g504364.t1; g52383.t1
Allium fistulosumAfisC1G01154; AfisC1G06506; AfisC1G06507; AfisC1G06511; AfisC1G06513; AfisC1G06520; AfisC2G02883; AfisC3G01730; AfisC5G04448
Allium sativumAsa0G05545.1; Asa2G04201.1; Asa5G01500.1; Asa5G02437.1; Asa5G02438.1; Asa5G02897.1; Asa7G02965.1; Asa7G03012.1; Asa7G03013.1
Arabidopsis thalianaAT1G46480.1; AT2G17950.1; AT2G28610.1; AT5G59340.1
Oryza sativaLOC_Os04g55590.1; LOC_Os04g56780.1; LOC_Os11g01130.1; LOC_Os11g01130.2; LOC_Os12g01120.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00046.26HomeoboxDomain56470.47.3e-20

Gene Ontology
AccessionOntologyName
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K18490OTX2; homeobox protein OTX2EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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