Detail information of Asa5G01638


Location
GeneChrStartEndStrand
Asa5G01638chr5415262106415277004+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020275819.11.6e-307transcriptional corepressor LEUNIG_HOMOLOG isoform X4
SwissprotO48847.11.2e-246Protein MUCILAGE-MODIFIED 1
trEMBLA0A5P1EDB61.1e-307LisH domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G32700.662.990.0 967LUH;MUM1LEUNIG_homolog

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag29410.t1
Allium fistulosumAfisC2G05312
Allium sativumAsa5G01638.1
Arabidopsis thalianaAT2G32700.1; AT2G32700.2; AT2G32700.3; AT2G32700.4; AT2G32700.5; AT2G32700.6; AT2G32700.7
Oryza sativaLOC_Os02g56880.1; LOC_Os04g43130.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08513.8LisHDomain103530.81.7e-07
PF00400.29WD40Repeat48551412.80.16
PF00400.29WD40Repeat52455620.60.00053
PF00400.29WD40Repeat56360029.76.9e-07
PF00400.29WD40Repeat64768121.30.00032
PF00400.29WD40Repeat72876418.50.0025

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14963WDR5, SWD3, CPS30; COMPASS component SWD3EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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